PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01252
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 296aa    MW: 32279.8 Da    PI: 4.7481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01252genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1976130356
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  EMT01252  76 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 130
               45589*************98**********************************9 PP
2HD-ZIP_I/II122.91.6e-3975168193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+d+l + +++L +++++Lr+++++
     EMT01252  75 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHDELLAGRDALLADNHRLRSQVTS 168
                  69*****************9999*******************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.38E-1764134IPR009057Homeodomain-like
PROSITE profilePS5007117.63771132IPR001356Homeobox domain
SMARTSM003896.7E-1774136IPR001356Homeobox domain
PfamPF000461.1E-1676130IPR001356Homeobox domain
CDDcd000861.00E-1676133No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1978139IPR009057Homeodomain-like
PRINTSPR000313.1E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6112128IPR000047Helix-turn-helix motif
PfamPF021833.1E-14132174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESGRLIFGS AAPCRAAGAG GGQMMLFGGS GSFLGGSPVV VGVEDGRRKR PFLTTVDEEL  60
QLDEEMYGYY GHAPERKRRL TAEQVRALER SFEEEKRKLE PERKSELARR LGIAPRQVAV  120
WFQNRRARWK AKQLEQDFDA LRAAHDELLA GRDALLADNH RLRSQVTSLT EKLQAKESSK  180
PEEPTAVSGT ADAGVPAVEL KDGYAACDGA AGLLAGFAGG ANDSPESNSY LADARSPPSS  240
SDDDCAGAVR GELNSCAFFL PEYAMLDVAA AERGSVQQGE EEEEEAQRKY WAWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERKRRL
2124132RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568500.0AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169950.10.0homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC12e-73HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLR7W2C00.0R7W2C0_AEGTA; Uncharacterized protein
STRINGEMT012520.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-36homeobox 1