PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401904.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 715aa    MW: 74708.2 Da    PI: 8.177
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401904.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.5e-12257319255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse...ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GV+ ++ +gr++A+ +d   +    g     r ++++lg + ++eeAa+a++ a++++ g
  XP_011401904.1 257 LFRGVTKHRLTGRYEAHFWDaSHKretKGkggrTRgRQVYLGGYTSEEEAARAYDLAALAFLG 319
                     69***************9997666776226775227**********************99876 PP
2AP249.61e-15362413155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +++ g+W+A+I  +  +g +k+ +lg+f +aeeAa+a+++a+ k++g
  XP_011401904.1 362 SQYRGVTKHHQHGKWEARIGRV--DG-SKYLYLGTFESAEEAARAYDRAAVKFRG 413
                     78****************9885..34.7************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-12256328IPR016177DNA-binding domain
PfamPF008478.7E-8257319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-13257328IPR001471AP2/ERF domain
PROSITE profilePS5103217.135257327IPR001471AP2/ERF domain
SMARTSM003802.8E-21257333IPR001471AP2/ERF domain
CDDcd000183.25E-23362420No hitNo description
SuperFamilySSF541713.66E-17362422IPR016177DNA-binding domain
PfamPF008471.3E-10362413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-19363421IPR001471AP2/ERF domain
PROSITE profilePS5103218.571363421IPR001471AP2/ERF domain
SMARTSM003803.8E-33363427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MSLLSADLGP LLDSLPQLPA LARLDSLLFS SPRWRALLDV ESPHAEAGGG RGEDPRNVPS  60
RIGRKRSWEM PAAEGAASAR PDSPAGVTGP AAYKSQRTEY APSYRPAPGS LPQGFVPVLQ  120
GGSPASLAGK QGSEDEFGQD LSPVDVLHRH DSGLSSLLRS VPSAHDSPDT PRSTSSPEAG  180
AGGYAPAHAG AGAGLSRLAR AGGEGTPRPS GPARAVPDAA RPTALTAAAM GPRRRPHCPT  240
KSTKAVPTGE NGVFTSLFRG VTKHRLTGRY EAHFWDASHK RETKGKGGRT RGRQVYLGGY  300
TSEEEAARAY DLAALAFLGA AAAINFPVED YTESLAEMEE LTSDEVVSRL RRGSVGFARG  360
ASQYRGVTKH HQHGKWEARI GRVDGSKYLY LGTFESAEEA ARAYDRAAVK FRGRKAITNF  420
KLTMYEDVLQ DPDSYDLGVP QSSTGPYLPD GSLAVPGVQT RSGGRARRGT QPMLPMGFDP  480
GTSGLYAPYV RCDAAGNLVV MQGPPPGLPH DHPATAHLAA AAAAVGLDPS MWGHPAWTSP  540
QMHEGGGAWP GHEPGQPGLQ MSGPSQAQAQ PQQQQQGGVQ QYHDRPDQQQ YHNVSGQMQE  600
DRPRLSPVKV RPPPAHDGRE GAAAAAHPPA PGLSPLAASL MSPLGLKDGS RAGSGAGMPG  660
QPGSSSSCAP DGDFWAAVHW LDSLDLAHGL PPAGANSGLG PAPLSPLGIT PLAPH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401904.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A087ST010.0A0A087ST01_AUXPR; AP2-like ethylene-responsive transcription factor BBM2
STRINGA0A087ST010.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-43AINTEGUMENTA-like 5