PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011401672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | C3H | ||||||||
Protein Properties | Length: 184aa MW: 20058.8 Da PI: 6.8862 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.3e-06 | 41 | 56 | 11 | 26 |
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 + G C +Gd C++aHg XP_011401672.1 41 KEGSCVRGDACPYAHG 56 44*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.582 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MASIGGAPTT QLHGQDLGFD RAFDINDPCF STDQFRMYEF KEGSCVRGDA CPYAHGIFEC 60 WLHPTRYRTQ MCTDGPRCQR RVCFFAHLEG EVRLPEGNAP LLSAELQSSL AAGAHCLEGV 120 PLHISSGSLG VCAARECACQ ADAPWCAPRN PNPMVPLSPH PAPPTLSFLS CACAQRHWRS 180 RAPV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011401672.1 | 1e-134 | Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A087S9Y4 | 1e-133 | A0A087S9Y4_AUXPR; Zinc finger CCCH domain-containing protein 30 | ||||
STRING | A0A087S9Y4 | 1e-134 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP60 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 6e-23 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23611416 |