PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401584.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 316aa    MW: 34534 Da    PI: 6.5654
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401584.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.8e-10931326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++lCr++++ GtC+yG  C+F+H+
  XP_011401584.1  9 RVLCRYYLE-GTCRYGQACTFSHD 31
                    78*******.*************7 PP
2zf-CCCH25.32.7e-084058625
                    -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                    C+++a+ G+CkyGd+C++ H
  XP_011401584.1 40 CKYWAA-GFCKYGDKCRYDH 58
                    ******.************* PP
3zf-CCCH18.53.6e-06251272525
                     --SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartG.tCkyGdrCkFaH 25 
                      C++f ++   C++G++C++ H
  XP_011401584.1 251 DCMHFDKGRgACPFGASCHYKH 272
                     5******889************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.117633IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7831IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7931IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-71134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2913461IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-53560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-63659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-53959IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-64058IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.4E-13160231IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF146349.2E-9162218IPR001841Zinc finger, RING-type
SuperFamilySSF578501.56E-14162224No hitNo description
CDDcd001622.63E-7162219No hitNo description
SMARTSM001847.9E-7163216IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.711163217IPR001841Zinc finger, RING-type
PROSITE patternPS005180186195IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.662246275IPR000571Zinc finger, CCCH-type
SMARTSM003560.03246274IPR000571Zinc finger, CCCH-type
PfamPF146083.7252272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDSLMSLNRV LCRYYLEGTC RYGQACTFSH DLQDTPSMVC KYWAAGFCKY GDKCRYDHKH  60
PHRAPRAAPK PAATSGTAPS PEPGAPGLGS EPPASHALLA SLPLDPFETD AGQGAEPGAA  120
AVVDDDAMDG LGGWEEEGPA HLRECGARHD RLAARQAAAR LECAICLERV LGKAEAGARR  180
FGLLACDHVF CLACIRSWRQ EGEVDVDTAL RTCPVCRQTA FFVTPSTVWP ESAEQKQAIV  240
EGYRAKLASI DCMHFDKGRG ACPFGASCHY KHAYEDGTVE VPSNRLAADE EGEVRMLQPM  300
RLSDFITITD RRSRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401584.10.0E3 ubiquitin-protein ligase makorin
TrEMBLA0A087SS460.0A0A087SS46_AUXPR; E3 ubiquitin-protein ligase makorin
STRINGA0A087SS460.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-53C3H family protein