PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401115.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 356aa    MW: 37441.1 Da    PI: 6.9464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401115.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.5e-08101122426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+++ r G+C +Gd C+++Hg
  XP_011401115.1 101 VPCPDYKR-GICLRGDACPYSHG 122
                     69******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-797123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.00497124IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5101122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4101125IPR000571Zinc finger, CCCH-type
SMARTSM003566132155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTSLMYHNLT SCFDQVGILD VCCGDPFGQQ ILAAALPTEG EESVSDELNA PEYSTDEFRM  60
FQFKVERCGK RCVHDWRCCP FAHPTENARR RDPRLVEYLP VPCPDYKRGI CLRGDACPYS  120
HGVYECWLHP AKYRTQLCKE GPACRRPVCF FAHAVRDLRQ PTHTPGEGSG PRAMLHGAGP  180
AHATIRAAYN PRAASLDSPF GAPAPAEGAL GIHPALLSLI DSGLGGSAFA PAAVASAGAS  240
ADSASLSALL AGLGSCSLDG SGGAPGPRHG HDQPPLESFA LFSSAPSGGF LGPAGGAAWG  300
PPAQTQAAGA ASRAASFDTA FLAKQQATAQ QDRVFFDARN GVPRHSAEFG RTACLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401115.10.0Zinc finger CCCH domain-containing protein 56
TrEMBLA0A087SQU90.0A0A087SQU9_AUXPR; Zinc finger CCCH domain-containing protein 56
STRINGA0A087SQU90.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.15e-48CCCH-type zinc finger protein with ARM repeat domain