PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400627.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family GATA
Protein Properties Length: 942aa    MW: 100155 Da    PI: 6.609
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400627.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.83.6e-14868899132
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                     C nCg  +Tp+WR gp g++tLCnaCG++++k
  XP_011400627.1 868 CLNCGCHSTPQWRCGPLGPRTLCNACGVRFKK 899
                     99*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3005.9E-45301519IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525405.7E-44304540IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000091.20E-21331476No hitNo description
SMARTSM003821.0E-17343478IPR003593AAA+ ATPase domain
PfamPF000048.6E-33347475IPR003959ATPase, AAA-type, core
PROSITE patternPS006740448467IPR003960ATPase, AAA-type, conserved site
SuperFamilySSF577161.57E-9861900No hitNo description
SMARTSM004015.9E-6862910IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648862898IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.4E-11866899IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.02E-13867912No hitNo description
PfamPF003201.2E-11868900IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
METWTELWDT KRCVNPACKV NVVNRDVNGA VNILMLTKCF FERTSLASAT TWPAASTAAA  60
RPSLQQIRAA AELSWQELDE HMHRAGASRQ GSPAGPATPR PSVEETADGS VRVILHIPAG  120
LSVPGWGAEG GTTLLQRSSD ALGTLSVRVF RPAASDRPAR VEIAGAFQAA DLALLQAAAR  180
GACGLPGGAR PWADELGAVL GLGRGLGSVF DLGPLGPMMQ HMQEFMREFQ ALEGEEAGPV  240
YPGEERDAAP FPSAQHRAKR FDDWGGGGRE QAPSPAAAAE RVLTEHGATV IHPGPPGSVD  300
WGVLAGYEAQ KRQMEDTLLL SLLHPEVHAG IAARTRAAPG PLRPRAVLFE GPPGTGKTTS  360
ARILATQAGV PLVYIPLESI ASKWYGEAEA RLGRLLAACE ALPSGCIVFL DEVDSLATAR  420
GESMHEATRR TLGVLLRHMD GFDANKRTVV IAATNRKSDL DPALLSRFTT SVYFGLPTED  480
DRRDEGLGGG VLGLRFDHRA HILEQYAKHL TPEELAELAG GTPGLAGRDL RDVCEQAERR  540
WASKDVAPSA LPAYMLNAEE RRASSTDSTS TAHGAAAVHS GVSTSFPLQK ALVGPLRQVS  600
LDLLTAAALA HDTDTPPERH SIFQDVLEQL SGRQEGSVSR TTSGLVPLPS LHFLEGLLDD  660
MEMNSSHPNE PPLYLPLDSF DLVDRSCSGE QPAIGSPPDQ PHHGLPSPRA HPRPLIRQPY  720
VTYSTPPRAA PPTCEPPAAG TTPGGRWRAR RQGPSRLRTG ASAERAGRRA APPPDDEEDE  780
EEDLEAPEMV LLTSKSGRVR RVASFVGGKR AREALQAVSP AKAPAALRAL PGSESELSVG  840
GESGEEADLG SGRLGRRGRG AKAQRTTCLN CGCHSTPQWR CGPLGPRTLC NACGVRFKKG  900
LPLNCWPLRD GMVLPPGATL PPGLEVPEGM RIYSHAQAGC LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3d8b_A3e-2829054774312Fidgetin-like protein 1
3d8b_B3e-2829054774312Fidgetin-like protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400627.10.0Fidgetin-like protein 1
TrEMBLA0A087SPI60.0A0A087SPI6_AUXPR; Fidgetin-like protein 1
STRINGA0A087SPI60.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-12GATA transcription factor 12