PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400531.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 564aa    MW: 62967.3 Da    PI: 9.8789
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400531.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.73.8e-13455479125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ykte Cr +a+tG+C+yG+rC+F+H
  XP_011400531.1 455 YKTEACRSYAATGHCPYGSRCRFIH 479
                     9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.07E-10278No hitNo description
SuperFamilySSF484039.17E-12980IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-102280IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.8672979IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.5142957IPR002110Ankyrin repeat
PfamPF119041.9E-29144420IPR021832Ankyrin repeat domain-containing protein 13
Gene3DG3DSA:4.10.1000.101.1E-12450480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-8451481IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-8454481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079454482IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10455479IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MPLHGSLPLA ERLVHTLGVN HEYPLHKWPL HLAVIRGKRE IVEALLEAGA SVGAKNIARW  60
NALDEAIALG NGELVHLLFL QLRKEWKQEK AQKKERLLEV LKELPDFSMK VLKWDLGSGM  120
FGVILRQFAP DDTYTITKLG SRLRIDGSLM GLDRGAGGVL PRWRRGAFSL LIDAEPSPAP  180
TFFANHEKAR YVDLYKERKE RRKNVDREVA LLMDHGGEKV KMRTTASDFR PVKTWLQRPA  240
TAVVDGWDTQ VFEWTGKMAA VSRQKAAVEI PGASTFEAYL AMAMPDDVVA ETELDPSSKP  300
EKSRVWFKRA ARARGEEAGS LPAGEAKLRE ITTQCWMAKD FPLTLRQLLP LLEALGEANQ  360
HVERAAEFMH RWSDQNLFPV KVQIPLMWTV YLSMRFKQFE LLGADHPARN AGYFQVPAGY  420
KEVTVAEIKE ARESENLEFA HGRGELRTVQ RHRKYKTEAC RSYAATGHCP YGSRCRFIHK  480
YDGPPSTAGA GTMSAAPQTA RSSLPILGQE PTGGPQPPHA LGLASAPGTP TGAHLATRAV  540
RRQGSECDEA SRRLPIFARL AKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-134244791772Tristetraproline
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400531.10.0Ankyrin repeat domain-containing protein 13C
TrEMBLA0A087SP940.0A0A087SP94_AUXPR; Ankyrin repeat domain-containing protein 13C
STRINGA0A087SP940.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-10C3H family protein