PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400319.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 339aa    MW: 36701.8 Da    PI: 8.9517
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400319.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56.1e-12173220254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      y+GV++++ ++rW+A+++       + ++ +lg f   eeAa+a++ a+++ +
  XP_011400319.1 173 AYRGVSRHRLTQRWEASLWL------NgRQLYLGGFNGQEEAAAAYDLAALACK 220
                     69***************999......44**********************9866 PP
2AP229.81.4e-09264307149
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                     s+y+GV+  + +grW+A+I  +   g rk++s g f +++eAa+++++a
  XP_011400319.1 264 SKYRGVS-GH-NGRWEARIGSF---GGRKNVSFGIFESEDEAARQYDRA 307
                     89****8.44.7******9997...336**********99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-13172229IPR016177DNA-binding domain
SMARTSM003801.6E-15173235IPR001471AP2/ERF domain
PfamPF008475.1E-8173221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12173229IPR001471AP2/ERF domain
PROSITE profilePS5103214.987173229IPR001471AP2/ERF domain
PROSITE profilePS5103212.128259321IPR001471AP2/ERF domain
PfamPF008471.9E-5264307IPR001471AP2/ERF domain
CDDcd000183.52E-14264321No hitNo description
SuperFamilySSF541713.6E-11264322IPR016177DNA-binding domain
SMARTSM003804.2E-14265327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-11265322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFSIRQLCDA DAALESGGEL IDFGNLSYLP SEEDLRVHVF DPVRSPRPRT LPAPPPPVPV  60
LSLHLVPPPP RLPPLQRPFP GGRLEDGAAL GSPKRGRGGE SSESEPSPKR WPSSASGYFT  120
DDSPSPRSTV SRAQAQGDPA PGTGARSRLA TQPAAAPGQG EQAGAPPGGR TSAYRGVSRH  180
RLTQRWEASL WLNGRQLYLG GFNGQEEAAA AYDLAALACK GLGAMTNHPP EEYTEQLAEI  240
AGLTRDEVVA YVRRRSSAFS RGKSKYRGVS GHNGRWEARI GSFGGRKNVS FGIFESEDEA  300
ARQYDRALIL EKGRSAKTNF PLQDYEREVA QHEAYLQSM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400319.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A087SNP80.0A0A087SNP8_AUXPR; AP2-like ethylene-responsive transcription factor PLT2
STRINGA0A087SNP80.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-38related to AP2.7