PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399463.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family NF-YC
Protein Properties Length: 263aa    MW: 26909.5 Da    PI: 4.435
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399463.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.27.5e-13201011697
           NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                     f+nh+   arikk++++dedv +++  +P+l+ska + f+ +l   s   a++ + + l+ s i+a v++    df  + v 
  XP_011399463.1  20 FRNHAPFTARIKKMMQSDEDVGKVAKASPILISKALDDFLSKLLEGSIAVAQQHNAKILNSSHIKAHVQSDPLLDFCREAVA 101
                     567776679*******************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-182188IPR009072Histone-fold
SuperFamilySSF471132.19E-1528103IPR009072Histone-fold
PfamPF008084.5E-132885IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPDDAGTGDE GPLSSTSKFF RNHAPFTARI KKMMQSDEDV GKVAKASPIL ISKALDDFLS  60
KLLEGSIAVA QQHNAKILNS SHIKAHVQSD PLLDFCREAV AEVPDLPPVT DEVEAATPRA  120
KKRAKPAAKE EGRTAGPAKP RAPRQKKPAS GAGQAAVLAG EAGAPGTTGG GDEAPGLQQA  180
AATGPEQEAA SLPAHDGGDT VEQAPLVVGE GTERGSSHPA QGTGADRGPA SAAAESLAGP  240
AGTALQDPEP TEDDYDEDDY DEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A7e-1528901577Transcription Regulator NC2 alpha chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399463.10.0DNA polymerase epsilon subunit C
TrEMBLA0A087SLC10.0A0A087SLC1_AUXPR; DNA polymerase epsilon subunit C
TrEMBLA0A1D1ZQU60.0A0A1D1ZQU6_AUXPR; Uncharacterized protein (Fragment)
STRINGA0A087SLC10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.14e-19NF-YC family protein