PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399204.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 420aa    MW: 44487.3 Da    PI: 7.1635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399204.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09196220126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y  ++C++f++ G Ck+Gd C+F+Hg
  XP_011399204.1 196 YQGVPCPDFRK-GSCKRGDACSFSHG 220
                     56689******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502979.43644121IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-644145IPR020683Ankyrin repeat-containing domain
SMARTSM003561.2E-4195221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418196222IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7198220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5227259IPR000571Zinc finger, CCCH-type
SMARTSM0035611230253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGPLHPLPPE ASAALECDNP CLLESLPTAG TPFYAWFDSQ QQCQARSLLA LAAQGGAARV  60
VAALLVLPGA REAARLPSPT DLCTPLHDAC ASPGPGTHRI IASLIAAGAD TQALNAAGQR  120
PGDLLTQVQA NPAPKETDGR RVSQLSKECY CTDEFRMYQF KIDMCPRLAE VHDWTDCPYG  180
HPDEKARRRD PRRYCYQGVP CPDFRKGSCK RGDACSFSHG VFECWLHPTM YRTQLCKEGA  240
RCARAICFFA HSMEELREVA RGTAAEARTP AAALEPEDEP WRALARVRQH ACTPASVGHM  300
IARSHSVSST DSGASCGTPA WPGAANAAAS WGAAGWGPAG PAPGSHGLHP HAVWPAGLCA  360
QARVPVSPHG AHPPFPFQAR PAAPGAPPGA AEPPTHCAAA APAPCFLPSD LQFTDAVCQW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399204.10.0Zinc finger CCCH domain-containing protein 33
TrEMBLA0A087SKQ40.0A0A087SKQ4_AUXPR; Zinc finger CCCH domain-containing protein 33
STRINGA0A087SKQ40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-49C3H family protein