PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396996.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 328aa    MW: 35907.4 Da    PI: 6.5166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396996.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-11187212126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C +Gd CkF H+
  XP_011396996.1 187 YQPDICKDYKETGYCGFGDACKFLHD 212
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.32E-9183217IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709186214IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9187212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12187217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-10255309IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.01E-10263311No hitNo description
PROSITE profilePS5008910.439264304IPR001841Zinc finger, RING-type
PfamPF146341.3E-7264306IPR001841Zinc finger, RING-type
SMARTSM001841.3E-5264304IPR001841Zinc finger, RING-type
CDDcd001625.31E-5264306No hitNo description
PROSITE patternPS005180282291IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTSEAGPLPE ASERNSRDAS TSKPSADPEG STIVFAKRRN RGSIRKKPTS EAGGEGAEAG  60
EGLAPLIKRP ARTQAPAQGT EQPASGGRPF AFESSNTLQQ SQDGGATRNL ETETAHDRDA  120
RALREQVLAQ QAEEGGAEGA TYKGMNNYRD YRAGFRREQT IGAEKGGGAH GPLRASTNVR  180
MTVRVDYQPD ICKDYKETGY CGFGDACKFL HDRGDYKAGY ELDREWEEKQ KRERERLLTN  240
WAGAGEAEAS GSESEDDEGL PFACFSCREP WHKFSDPVVT RCGHYFCEQC ALKENARTGR  300
CPACGQALQG IFNVAHDVVK RWKEAQKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-54102324112319RING finger protein 113A
5z58_M3e-54102324112319RING finger protein 113A
6ff4_t3e-54102324112319RING finger protein 113A
6ff7_t3e-54102324112319RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396996.10.0Zinc finger CCCH domain-containing protein 51
SwissprotQ8GX842e-87C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG63e-87C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A087SEF60.0A0A087SEF6_AUXPR; Zinc finger CCCH domain-containing protein 51
STRINGA0A087SEF60.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-79C3H family protein