PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011396723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | Nin-like | ||||||||
Protein Properties | Length: 261aa MW: 27454.7 Da PI: 8.7982 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 69.9 | 3.5e-22 | 35 | 84 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+led++++F+lp +A+++Lg++lTvLKr CR+ G++RWP+R++ksl XP_011396723.1 35 SSITLEDVAAHFHLPADKACQQLGISLTVLKRVCRRVGVDRWPYRRVKSL 84 579*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.587 | 18 | 104 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-20 | 36 | 84 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLESTPATNL HGSDSGPSRT RSTRRKLSKH GVLASSITLE DVAAHFHLPA DKACQQLGIS 60 LTVLKRVCRR VGVDRWPYRR VKSLERIFHS LNDAPGSGAA RDAHLATWSS EESALGTVVL 120 HAGAPGSPRR ALLHGGAALD LGCASPDTSG REDGGCEAPT PRRSSDESMA ALLRAALPEV 180 LERGAAAGPA PRERRKGTDG FASGSTSDAS ARPEARPDGD AWAQGPSQPD AAAVRQQLES 240 LARQLGHTLC DVQLQPHAAR P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011396723.1 | 0.0 | Protein RKD3 | ||||
TrEMBL | A0A087SDP1 | 0.0 | A0A087SDP1_AUXPR; Protein RKD3 | ||||
STRING | A0A087SDP1 | 0.0 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-11 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23618204 |