PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395740.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family Nin-like
Protein Properties Length: 296aa    MW: 31932.8 Da    PI: 6.5772
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395740.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK53.83.9e-173383252
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                    e +++ledl++  +l+ + AA  L+v+ T  K +CR++G++ WP+Rkiks+
  XP_011395740.1 33 ERQVTLEDLKRVAHLSQERAAAALNVGNTRFKSACRELGMRGWPYRKIKSV 83
                    5799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.49217103IPR003035RWP-RK domain
PfamPF020425.5E-163583IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSAKLTTHST CSSEGAEDAV PMVSIRTHRG SGERQVTLED LKRVAHLSQE RAAAALNVGN  60
TRFKSACREL GMRGWPYRKI KSVRSLLYAI QKEPDSVHPD IWPAILWRLD RLVDHHFHNP  120
TEPLTEEFKV LRQAAYKRRH GQKRRSGDGA AACSSSEHCL DEDLGAALPA GHLPVGQAPC  180
TGYQAFEDSA QSPCTPPNAR ERALRRLGPA GEVTQEGVAE SGPGPRPEPP SADACPHAGQ  240
GVAGTPVCQL LPAALPSPSA PDLWCSLTWT SGLEFAPVPD EAREDLEDVY AQTASS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395740.10.0Protein RKD1
TrEMBLA0A087SAX00.0A0A087SAX0_AUXPR; Protein RKD1
STRINGA0A087SAX00.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP943444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.15e-11RWP-RK domain-containing protein