PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395481.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 585aa    MW: 61722.8 Da    PI: 5.9182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395481.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-0994136347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+  E+ l+++a  ++G + Wk+ a+++  +R +  + s+ qk+
   XP_011395481.1  94 SWSSGEESLFLEALDLHGRD-WKKCAEHLV-TRDPRAVTSHAQKH 136
                      7*****************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-487141IPR009057Homeodomain-like
PROSITE profilePS5129413.19587141IPR017930Myb domain
SuperFamilySSF466899.72E-889139IPR009057Homeodomain-like
SMARTSM007174.3E-791139IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-793139IPR006447Myb domain, plants
PfamPF002492.2E-694136IPR001005SANT/Myb domain
CDDcd001673.49E-594137No hitNo description
SuperFamilySSF1027122.09E-17287412No hitNo description
PfamPF144643.1E-11300385IPR028090JAB domain, prokaryotic
Gene3DG3DSA:3.40.140.102.5E-17304424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDVDAANDAA IARLLANEDG GDDEEEYSLD ADELEYAAGA PECLSEPGLK AHGRLSPDPV  60
PAEAGHVAPD QHQLTASGRR KRKDTGKQRT TSRSWSSGEE SLFLEALDLH GRDWKKCAEH  120
LVTRDPRAVT SHAQKHFIKL LLRGEALPEA VAASGAGYTL SGVAADGKLT VGIHVTSLEM  180
EAEPAGVVKR LPKASAALCA AKRGRKKRGS SDSEDEGRPL APAFPAAAEG SSPAEPTEYS  240
KARPRRQGGQ RAVMGDTSES LDLTCPKEFV GPPGSAAPLA QPFAVVTSSQ ARLVMDFHAH  300
LSGYEVIGLL GGRYEAGRRV LHVDEAYPCR RAQGSDSGTS VELDPASQVE ATTAMSARGQ  360
AAVGWYHSHP VFEARPSQKD NENQRNYQAL CHDPEAGLAP WVGAIVSPYD ASLPSTASQI  420
RMWVVRTSAG RLTPFSIRSQ GAEAGPASAH DDTLSSLRAA LVAQRDDPSR VRLGAVWRGY  480
TRLVQGHPDG PPLTKLEKLQ GALAAHLASQ GQRDALFSWL LDAVHEEWGV DLQPLAAAKA  540
EAVPAETGEV CHCEPGLNLS GESCAASAGA AEALPPGGRP SLGLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395481.10.0Histone H2A deubiquitinase MYSM1
TrEMBLA0A087SA710.0A0A087SA71_AUXPR; Histone H2A deubiquitinase MYSM1
STRINGA0A087SA710.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.23e-09MYB_related family protein