PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 919218 | ||||||||
Common Name | ARALYDRAFT_919218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17415.2 Da PI: 10.3469 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H 919218 82 HPCPICGVEFPMGQALGGHMRRH 104 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-6 | 37 | 104 | No hit | No description |
Pfam | PF13912 | 8.0E-12 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.1 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-11 | 82 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVARSDIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFR CKTCLKEFHS FQALGGHRAS 60 HKKPNNDTLS SGLVKKVKTT SHPCPICGVE FPMGQALGGH MRRHRNESGA GGGALVTRAL 120 LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 919218 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015475 | 0.0 | AB015475.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10. | |||
GenBank | AY050915 | 0.0 | AY050915.1 Arabidopsis thaliana putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds. | |||
GenBank | AY133818 | 0.0 | AY133818.1 Arabidopsis thaliana clone U11346 putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | X98673 | 0.0 | X98673.1 A.thaliana mRNA for ZAT12 protein. | |||
GenBank | X98674 | 0.0 | X98674.1 A.thaliana zat12 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864652.1 | 1e-116 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 1e-112 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | D7MT32 | 1e-115 | D7MT32_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802618.1 | 1e-116 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-114 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 919218 |
Entrez Gene | 9302427 |