PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 919101 | ||||||||
Common Name | ARALYDRAFT_919101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 294aa MW: 34260.1 Da PI: 8.5517 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.8 | 5e-17 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kR++ + KKA+E S+LC+++ ++i++++t 919101 10 RIANDKTRITTYKKRKASLYKKAQEFSTLCGVQTCLIVYGPTK 52 89**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.6 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.72E-26 | 3 | 81 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-18 | 4 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MPPKKVDLQR IANDKTRITT YKKRKASLYK KAQEFSTLCG VQTCLIVYGP TKATDEVVPE 60 PEIWPRDETN VRDIIRKYKD TVSTSCRKET NVETFVNDLG KTNEVETKKR VKRENKYCSW 120 EEKLDKCSRE QLHEIFCAVD KKLHEAVMRQ DLSMYRVHHQ AMDTPIPQNF MDQHFMPQYF 180 HEQPQFQGFP NNFNNMGFSL ISPHDGQIQM DPNLMENWRD LALTQSLMMS KGNAGTQLMQ 240 MQAQPYYNRE PIVPRSAGFN VNPLTGYQVP FNIPWRLSGN QVEDWELSGK KQI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 919101 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016885 | 0.0 | AB016885.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22. | |||
GenBank | AB493798 | 0.0 | AB493798.1 Arabidopsis thaliana At5g58890 gene for hypothetical protein, partial cds, clone: RAAt5g58890. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864598.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
Swissprot | Q9FIM0 | 0.0 | AGL82_ARATH; Agamous-like MADS-box protein AGL82 | ||||
TrEMBL | D7MR43 | 0.0 | D7MR43_ARALL; MADS-box family protein | ||||
STRING | scaffold_802501.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-180 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | 919101 |
Entrez Gene | 9300674 |
Publications ? help Back to Top | |||
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