PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 918835 | ||||||||
Common Name | ARALYDRAFT_918835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HRT-like | ||||||||
Protein Properties | Length: 486aa MW: 54825.2 Da PI: 9.3525 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 51 | 2.4e-16 | 278 | 308 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+le+G +C+r+PvkgRKRC HKG+R+ 918835 278 VCGVLLENGGCCNRSPVKGRKRCIDHKGQRV 308 7*****************************7 PP | |||||||
2 | HRT-like | 45.5 | 1.2e-14 | 338 | 368 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil d +C++ Pv+gRKRCe H GmRi 918835 338 MCGVILPDMEPCNKRPVPGRKRCEDHRGMRI 368 6*****************************7 PP | |||||||
3 | HRT-like | 29.2 | 1.6e-09 | 407 | 433 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +++++G +C+r+ kg KRC++HK 918835 407 CEATTKNGLPCTRSSPKGSKRCWQHKE 433 99************************7 PP | |||||||
4 | HRT-like | 56 | 6.8e-18 | 454 | 483 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l +G +C+r+PvkgRKRCeeHKGmRi 918835 454 CGVKLCNGLICERSPVKGRKRCEEHKGMRI 483 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MEFGDGGSFA VVPTVFKREN YKRTKHDAVF SKWQVLIGSN DWEDFQTGKD GVGRYRVHNL 60 PRKSCPGLYE LGVAVIGQDQ GRKLESDDVL AAYLGQAESV RSRLQRYGRS GAHLRNVNNL 120 NDCETIESPV KKAVTGGLFE DIFSKQGSIL YRWAPMRSKR EAEATEGMLL STFDYAWNKG 180 SNGERRQLDL LKKLGDREFM SKRKSGISRV LFPFLRNQVG IRIKGEKHLL KEERKLSCDV 240 DEEKSNNFFT SILKLTRSRP QPVSDRFEEV DGSSSDSVCG VLLENGGCCN RSPVKGRKRC 300 IDHKGQRVCR VSPEKQTPPQ PEIFTGQDHH THKDSDVMCG VILPDMEPCN KRPVPGRKRC 360 EDHRGMRINA FLFLLNQTDR EKTVRDEISN PESHTESSEQ EASTRFCEAT TKNGLPCTRS 420 SPKGSKRCWQ HKEKTSCKQS PENVQPGAEK LVACGVKLCN GLICERSPVK GRKRCEEHKG 480 MRIIT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 918835 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013392 | 0.0 | AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866167.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
Swissprot | F4K933 | 0.0 | ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | D7MM69 | 0.0 | D7MM69_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802235.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 0.0 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | 918835 |
Entrez Gene | 9302241 |