PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 916845
Common NameARALYDRAFT_916845
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 329aa    MW: 36777.2 Da    PI: 5.7491
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
916845genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-1852112257
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               ++R+++++eq+++Le+ F++ + +p +ee++++  +l    ++ +++V++WFqNr+ + k+
    916845  52 KPRWNPKPEQIRILESIFNSgTVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 112
               89*****************99*************************************995 PP
2Wus_type_Homeobox110.59.2e-3651113264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k
             916845  51 PKPRWNPKPEQIRILESIFNSGTVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 113
                        579**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.52748113IPR001356Homeobox domain
SuperFamilySSF466892.1E-1250116IPR009057Homeodomain-like
SMARTSM003896.0E-850117IPR001356Homeobox domain
CDDcd000861.99E-851113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-652118IPR009057Homeodomain-like
PfamPF000464.4E-1652112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSSNKNWPSM FKSKPCNNNH HHQHEIDTPS YMHYSNCNLS SSFSSDRVPD PKPRWNPKPE  60
QIRILESIFN SGTVNPPREE IQRIRIRLQE YGQIGDANVF YWFQNRKSRA KHKLRVHHKN  120
PKMSKKDKMV IPNNDADHCF GFVNQETGLF PVQNNELVVT EPASFLFPVH NDPSAAQSGF  180
GFSDFVVPVV TEEGMAFSTV NNGVNLETDD SFDKIPAINL YGGDGNGGGN CFSPLTAPLT  240
VPLAINQSQE ERDIILSGDE DVENSVSPVR MTVFINDMPF EVVPGLFNVK AAFGNDAVLI  300
NSFGQPIHTD EFGVTYQPLQ NGAIYYLI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap916845
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514000.0AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865213.10.0WUSCHEL-related homeobox 8 isoform X1
SwissprotQ6X7J50.0WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLD7MSP00.0D7MSP0_ARALL; Uncharacterized protein
STRINGscaffold_800245.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.10.0WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]