PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 916469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 162aa MW: 18468.1 Da PI: 6.2236 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.5e-17 | 15 | 101 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk l ++++ l +p f+++h +gk+ ++kt+ l++ s ++W vk+ ++ lt+GW++F+ +++L+ gD+vvF+++g++ f +v++ 916469 15 FFKPL--LEGFRTH-LNIPVAFFSKHvEGKNDQNKTVNLRSdASEKTWLVKM--DGLN----LTDGWEDFAFSHDLRIGDIVVFRHEGEMVF--HVTA 101 66666..6677777.9***********8888899******97888*******..5555....***********************9998888..6655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-20 | 11 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.069 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.09E-15 | 13 | 100 | No hit | No description |
SMART | SM01019 | 2.1E-21 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-11 | 22 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MADQSLLHSP IKPHFFKPLL EGFRTHLNIP VAFFSKHVEG KNDQNKTVNL RSDASEKTWL 60 VKMDGLNLTD GWEDFAFSHD LRIGDIVVFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNIND 120 DDRNDQTNIG KLLLSEMYSA KAKPKQRSQS DSSSDHSCFE XX |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 916469 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT002947 | 1e-136 | BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020875226.1 | 1e-100 | B3 domain-containing protein REM17, partial | ||||
Swissprot | Q84WP3 | 7e-79 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | D7KQM9 | 6e-84 | D7KQM9_ARALL; T24P13.6 | ||||
TrEMBL | D7MVQ9 | 4e-89 | D7MVQ9_ARALL; Predicted protein (Fragment) | ||||
STRING | scaffold_704211.1 | 1e-118 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26680.1 | 2e-78 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 916469 |
Entrez Gene | 9329448 |
Publications ? help Back to Top | |||
---|---|---|---|
|