PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 916437 | ||||||||
Common Name | ARALYDRAFT_916437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 163aa MW: 18868.1 Da PI: 6.5156 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.5 | 2.6e-12 | 71 | 116 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++++rk++NRe+ArrsR RK+ + +eL v L +eN++L +l+ 916437 71 RKQKRKISNRESARRSRMRKQRQADELWSQVMWLRNENHQLLRKLN 116 689************************************9998886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.6E-11 | 67 | 131 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.5E-10 | 69 | 118 | No hit | No description |
PROSITE profile | PS50217 | 10.438 | 69 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-10 | 71 | 117 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.05E-11 | 71 | 120 | No hit | No description |
CDD | cd14702 | 3.31E-17 | 72 | 120 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 74 | 89 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MQPATNIFSL HGCPPSYLSH FPTSTPFCGQ NPNPFFSFES GVYTPQFMSL SSNNSTSEEG 60 EENLTEIFNE RKQKRKISNR ESARRSRMRK QRQADELWSQ VMWLRNENHQ LLRKLNCVLE 120 SQEKVIEENA QLKEETSELK HLISDMQLQN QSPFSGIRDD IV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 83 | 90 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00533 | DAP | Transfer from AT5G38800 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 916437 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB009048 | 1e-179 | AB009048.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6. | |||
GenBank | CP002688 | 1e-179 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002868752.2 | 1e-115 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 1e-101 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | D7MJU5 | 1e-116 | D7MJU5_ARALL; BZIP transcription factor family protein | ||||
STRING | scaffold_704179.1 | 1e-117 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3112 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G38800.1 | 3e-92 | basic leucine-zipper 43 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 916437 |
Entrez Gene | 9306891 |
Publications ? help Back to Top | |||
---|---|---|---|
|