PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 916274 | ||||||||
Common Name | ARALYDRAFT_916274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 148aa MW: 17830.6 Da PI: 10.8449 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5e-12 | 9 | 44 | 2 | 38 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 + WT+ Ed++l ++v+ +G ++W++ a++m+ gRt+k 916274 9 KFWTPSEDLKLTELVATYGARRWNRLAEKMQ-GRTGK 44 67*****************************.***97 PP | |||||||
2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 90 | 132 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eEd +++ a ++lG+ W++Ia+ + +Rt+ +++ w+ 916274 90 TAFTDEEDAKILSAQRELGNQ-WTKIAKLLH-RRTDIAVRNQWRH 132 689****************99.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.222 | 1 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.24E-10 | 6 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-7 | 7 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-8 | 11 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 11 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-10 | 11 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.37E-19 | 72 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.115 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-11 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 89 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.64E-7 | 91 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 91 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MHHERQEKKF WTPSEDLKLT ELVATYGARR WNRLAEKMQG RTGKRMCFHF CYSLFVFFRK 60 LKSYSSYYVL EGKGCRIRWL NKLDPRINKT AFTDEEDAKI LSAQRELGNQ WTKIAKLLHR 120 RTDIAVRNQW RHLNTKKVEE ANKRRNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 8 | 139 | 7 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 916274 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874175.1 | 1e-58 | transcription factor MYB105 | ||||
TrEMBL | D7MJD9 | 1e-106 | D7MJD9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_704016.1 | 1e-107 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.1 | 8e-33 | myb domain protein 110 |
Link Out ? help Back to Top | |
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Phytozome | 916274 |
Entrez Gene | 9306804 |