PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 915131 | ||||||||
Common Name | ARALYDRAFT_915131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 121aa MW: 13848.8 Da PI: 5.1897 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 62.9 | 8e-20 | 14 | 104 | 2 | 100 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 lkk+ye++++++++++isw ++++sf+++d e f+k +Lp++ n+ + L++YgF kv++e+k weF+++ F +g+ elleki 915131 14 LLKKTYEVVDHPSTNSIISWGHDNKSFIIWDLEGFEKFLLPNILSPGNLGVYASYLKLYGFLKVESEQK--------WEFADDDFVRGHPELLEKIT 102 589**************************************************************9984........*******************8 PP XX CS HSF_DNA-bind 99 rk 100 + 915131 103 DR 104 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.0E-20 | 10 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.22E-20 | 13 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.8E-6 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.7E-21 | 14 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.2E-18 | 15 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-6 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-6 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MDPSSSIARK ALDLLKKTYE VVDHPSTNSI ISWGHDNKSF IIWDLEGFEK FLLPNILSPG 60 NLGVYASYLK LYGFLKVESE QKWEFADDDF VRGHPELLEK ITDRYKIYCQ AFCAREGLII 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 915131 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870167.2 | 2e-85 | heat stress transcription factor A-4a | ||||
TrEMBL | D7M9X3 | 1e-83 | D7M9X3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_702873.1 | 2e-84 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14212 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 3e-22 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 915131 |
Entrez Gene | 9304219 |