PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 914975 | ||||||||
Common Name | ARALYDRAFT_914975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 170aa MW: 19335.9 Da PI: 10.3195 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 74.3 | 2.3e-23 | 20 | 109 | 3 | 101 |
HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXX CS HSF_DNA-bind 3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikr 99 l ++ye+++d++++++isws++g+sf+v++++ef+k++L++ F h++f F+R Ln Yg kkv++e weF+++ F kg+ el+++i+ 914975 20 LDRTYEVVDDPSTDSIISWSQSGKSFIVWNPSEFSKDLLHRCFGHHHFPLFTRTLNDYGIKKVDSEL---------WEFADDDFVKGRPELIRNINN 107 6789***********************************************************9877.........*******************98 PP XX CS HSF_DNA-bind 100 kk 101 + 914975 108 RG 109 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.0E-33 | 12 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.4E-26 | 20 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.1E-23 | 21 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.4E-21 | 21 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGKTKVKGSV SLRRPFVTCL DRTYEVVDDP STDSIISWSQ SGKSFIVWNP SEFSKDLLHR 60 CFGHHHFPLF TRTLNDYGIK KVDSELWEFA DDDFVKGRPE LIRNINNRGD SDSDSESRVS 120 TRNTILKKKK NNAESRVSTR VTIQTKKKKK KTNKLVAEAI AAQFQGLEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-13 | 20 | 113 | 21 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 149 | KKKNNAESRVSTRVTIQTKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 914975 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870105.1 | 1e-122 | heat stress transcription factor A-4a | ||||
Swissprot | P41151 | 4e-28 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | D7MBZ1 | 1e-121 | D7MBZ1_ARALL; Uncharacterized protein | ||||
STRING | scaffold_702717.1 | 1e-122 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16734 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-30 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 914975 |
Entrez Gene | 9306176 |
Publications ? help Back to Top | |||
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