PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914765
Common NameARALYDRAFT_914765
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 64aa    MW: 7039.9 Da    PI: 4.4885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914765genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.21.4e-101454242
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHH CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLp 42
                   lkk+ye++++++++++isw  +++sf+++d+e f+k +Lp
        914765 14 LLKKTYEVVDHPSTNSIISWGPDNKSFIIWDPEGFEKFLLP 54
                  589******************999*************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-10654IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-91155IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-81554IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MDSSSAMASQ ALDLLKKTYE VVDHPSTNSI ISWGPDNKSF IIWDPEGFEK FLLPYSGGSR  60
INF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap914765
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870167.22e-26heat stress transcription factor A-4a
TrEMBLD7MGW49e-39D7MGW4_ARALL; Uncharacterized protein
STRINGscaffold_702507.12e-39(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-12heat shock factor 1