PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 914704
Common NameARALYDRAFT_914704
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 127aa    MW: 14732 Da    PI: 10.0143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
914704genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.54.5e-19121052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F  k+y+++ed++++ +isw +++nsfv+++ ee+ ++ +   F   +f  F   L  YgF+++k+ +++        eF ++ F +g+ e l+++ 
        914704  12 FHVKVYKVVEDPSTDAIISWGKDNNSFVIWNLEELISSKILWRFHCMKFPEFHSELRYYGFQRIKNGSGE-------LEFGNEDFVRGQPERLKNMV 101
                   889****************************9999887777889************************99.......******************98 PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   +++ 
        914704 102 MRAM 105
                   8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-22798IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-258103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-218100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-1712101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-61235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-66375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALNFPKGIA AFHVKVYKVV EDPSTDAIIS WGKDNNSFVI WNLEELISSK ILWRFHCMKF  60
PEFHSELRYY GFQRIKNGSG ELEFGNEDFV RGQPERLKNM VMRAMSKNRA KFNAREAVKD  120
LQSLKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap914704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867931.13e-90heat stress transcription factor A-1
TrEMBLD7MGA26e-89D7MGA2_ARALL; Uncharacterized protein
STRINGscaffold_702446.11e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.14e-45HSF family protein