PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913945
Common NameARALYDRAFT_913945
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HRT-like
Protein Properties Length: 407aa    MW: 45531.3 Da    PI: 9.3635
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913945genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.42.4e-18203232130
  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
               +CGv+ledG++C+++P+kgRKRC eHKG+R
    913945 203 VCGVLLEDGTTCSTTPIKGRKRCSEHKGKR 232
               7****************************9 PP
2HRT-like42.11.4e-13258288131
  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
               iCGvil d   C+++Pv  R RCe HKGmR+
    913945 258 ICGVILPDMVRCRTKPVSRRRRCEDHKGMRV 288
               8*****************************7 PP
3HRT-like28.23.2e-09328355229
  HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
               C +++++G +C+r++ +g  RC++HK++
    913945 328 CEATTKNGLPCTRSAPEGSRRCWQHKDK 355
               99************************86 PP
4HRT-like64.12e-20374404131
  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
               iCG++l +GsvC+++PvkgRKRCeeHKGmRi
    913945 374 ICGFKLYNGSVCEKSPVKGRKRCEEHKGMRI 404
               8*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MFKRDDYIRT NHDAVSSKWQ GFARSMLLRK PVSETAELRK IFADYSLISR DLGPKILIGA  60
SDKENFRKGK DRVGRYRVQG AFPGLFELGH DHGRKDDVLV ANLGQAESES IRSRLRSYTR  120
SFAHHDFLKQ GLSQTILPTT QNKSGNRTEE KKSDSAEERE VSSDAAEKEG NSLPSLLRLS  180
RSRPQPVSDR HDDIVDGSDS ASVCGVLLED GTTCSTTPIK GRKRCSEHKG KRLSRVSPEK  240
HIPCEAPTVR ECEETDNICG VILPDMVRCR TKPVSRRRRC EDHKGMRVNA FFFLLNPTER  300
DKAVKEDKSK SETCTGMNQE DPSPGLFCEA TTKNGLPCTR SAPEGSRRCW QHKDKTLNHG  360
SSENVQSATV SQVICGFKLY NGSVCEKSPV KGRKRCEEHK GMRITS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap913945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0491710.0AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBankAL0494830.0AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615640.0AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869624.10.0protein EFFECTOR OF TRANSCRIPTION 1
SwissprotF4JU690.0ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBLD7MFC20.0D7MFC2_ARALL; Uncharacterized protein
STRINGscaffold_701687.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.10.0