PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913731
Common NameARALYDRAFT_913731
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 336aa    MW: 38343.6 Da    PI: 4.3195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913731genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20115165155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  913731 115 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFATAEEAAVVYDNAAIKLRG 165
             59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-34115172No hitNo description
SuperFamilySSF541714.97E-22116173IPR016177DNA-binding domain
PfamPF008471.6E-12116165IPR001471AP2/ERF domain
PROSITE profilePS5103223.854116173IPR001471AP2/ERF domain
SMARTSM003802.6E-41116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30116173IPR001471AP2/ERF domain
PRINTSPR003672.0E-10117128IPR001471AP2/ERF domain
PRINTSPR003672.0E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLMDEYMDLR PVKYTEHKTV IRKYTKKSSL EKKTSGRDSA RLVRVSMTDR DATDSSSDEE  60
EFLFPRRRVK RLINEIRLEP SSSSGDVSAS PMKDRKRLTV DSTVQKPSVS GQNQKKYRGV  120
RQRPWGKWAA EIRDPEQRRR IWLGTFATAE EAAVVYDNAA IKLRGPDALT NFTVPPEPEP  180
EPEPEPEQEP ESNMSVSISE SMDDSQHLSS PTSVLKYQTY VSEEPIDNLI KPVKQEFLEP  240
EQEPISWHLG EGNNNIDDSF PLDIPFLDNY FNESLPDISI FDQPMSPIQT ENDLFNDLML  300
FDNNNTEDND SSDIKEIGSM FNDLDDSLIS DLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21115172159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21115172462ATERF1
3gcc_A3e-21115172462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap913731
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355240.0AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project).
GenBankAL1615720.0AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY5608720.0AY560872.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g27950) mRNA, complete cds.
GenBankBT0330880.0BT033088.1 Arabidopsis thaliana unknown protein (At4g27950) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867478.10.0ethylene-responsive transcription factor CRF4
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLD7MDQ10.0D7MDQ1_ARALL; Uncharacterized protein
STRINGscaffold_701473.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-179cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]