PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 912686 | ||||||||
Common Name | ARALYDRAFT_912686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | BES1 | ||||||||
Protein Properties | Length: 318aa MW: 34196.1 Da PI: 8.6146 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 219.7 | 6.6e-68 | 12 | 152 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssala 104 +sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+ ++++ g+ ++ s++ss+q s++ssa++ 912686 12 SSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPP-ASDISGTPTNFSTNSSIQPSPQSSAFP 113 89*************************************************************************.*************************** PP DUF822 105 spvesysaspksssfpspssldsislasaasllpvlsvlsl 145 sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ 912686 114 SPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 152 ************************987..899999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.8E-62 | 12 | 136 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAAGGGGGGG SSSGRTPTWK ERENNKKRER RRRAITAKIY SGLRAQGNYK LPKHCDNNEV 60 LKALCLEAGW IVEDDGTTYR KGFKPPASDI SGTPTNFSTN SSIQPSPQSS AFPSPAPSYH 120 GSPVSSSFPS PSRYDGNPSS YLLLPFLHNI ASSIPANLPP LRISNSAPVT PPLSSPTSRG 180 SKRKLTSEQL PNGGSLHVLR HPLFAISAPS SPTRRAGHQT PPTIPECDES EEESIEDSGR 240 WINFQSTAPT SPTFNLVQQT SMAIEMKRSD WGMSGMNGRG TEFEFENGTV KPWEGEMIHE 300 VGVEDLELTL GGTKARC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-26 | 15 | 93 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-26 | 15 | 93 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-26 | 15 | 93 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-26 | 15 | 93 | 372 | 450 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00474 | DAP | Transfer from AT4G36780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 912686 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050394 | 0.0 | AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | AY097357 | 0.0 | AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866992.1 | 0.0 | BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 0.0 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | D7MBE2 | 0.0 | D7MBE2_ARALL; Uncharacterized protein | ||||
STRING | scaffold_700428.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11512 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 1e-98 | BES1/BZR1 homolog 2 |
Link Out ? help Back to Top | |
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Phytozome | 912686 |
Entrez Gene | 9303064 |