PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 907533
Common NameARALYDRAFT_907533
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 644aa    MW: 71890.2 Da    PI: 9.4468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
907533genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0749101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                      ++ W t++++ l +avk++   +W+++a++++      +  ++ +c++++q++
           907533  49 KQVWGTWDELVLTCAVKRHAFSDWDSVAKEVQarsrssLIVSAVNCRLKYQDL 101
                      689*****************************755555333677888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.58E-544105IPR009057Homeodomain-like
PfamPF002494.3E-649101IPR001005SANT/Myb domain
CDDcd001670.0033552102No hitNo description
Gene3DG3DSA:1.20.920.104.4E-17286399IPR001487Bromodomain
SMARTSM002971.6E-18292401IPR001487Bromodomain
SuperFamilySSF473701.01E-16297399IPR001487Bromodomain
CDDcd043691.68E-15298396No hitNo description
PfamPF004391.5E-10311386IPR001487Bromodomain
PROSITE profilePS5001412.996311382IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.4E-17439448IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MKEEEEEAVI SNGMNDDDDT NNINSSSEFD NNRIGDGDGD DNCNLNQIKQ VWGTWDELVL  60
TCAVKRHAFS DWDSVAKEVQ ARSRSSLIVS AVNCRLKYQD LKRRFQDSVD VGEENSEAAT  120
AEEDEVGEIP WLEQLRSLRV AELRREVQRC DDSILSLQLK VKKLEEEKDG DDGDNKPDLK  180
NDETKPARLN RETTESDRED NRSMNESNST ASVDKIADHD RLDGDKMVQA DENSRNPDPD  240
PVNKAAAPEE EERTVSKISE MSNSGELDES GTSTGPGKRK GQKYRSGGGG GDIKSAGDKS  300
QPLIDTIKLI RSHPHGSVFE SRLRSQETKD YKRLIRQHLD IKTIEKKVEK GSYVSSSLSF  360
YRDLKLLFTN AIVFFPTSSS ESMAAQELRT LVSNEMTKRT GKSGHNVIKA EAESNEQKSS  420
VLPLVACKKK SSASKKTPPS NSKQKDEKKS QEVSEEKTAT TTTTTSARSS RRTSKEIAVV  480
AKDTKTGRAK NNNKKQKDTK TESSDDGDDD EKEENSKTEK KTVAIATDKK KSVADFLKRI  540
KKNSPQKGKE ITSKNQKKSD GNVKKENDHQ KKTDGNVKKE NSKAKPRELR SNSTGKKKAE  600
VETDNNNKSS SKRKQTKETV EATGKRSRES GKDNKQPKKR SRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap907533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876536.10.0uncharacterized protein LOC9314386
TrEMBLD7LWL10.0D7LWL1_ARALL; Uncharacterized protein
STRINGscaffold_503237.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein