PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905731
Common NameARALYDRAFT_905731
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19715 Da    PI: 10.1658
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905731genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.7e-121664149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            k++e +  r vt+s+R++g   K +ELS LC+a+v  +++s tgk y++
  905731 16 KKVEKYQDRMVTYSRRQKGTNTKLSELSLLCGADVGFLVISCTGKPYTF 64
            56889999****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-12767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-17782IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.016768IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-81030IPR002100Transcription factor, MADS-box
PfamPF003191.4E-151764IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-83045IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-84566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSPKKTKGRK KINLKKKVEK YQDRMVTYSR RQKGTNTKLS ELSLLCGADV GFLVISCTGK  60
PYTFGNPSFE AVAKRFLNGE GSSLLQQDAQ HKMKMEELYK VYNSLVEKIA AEEKKLMMAK  120
AEALPFESNA WWKIDPAKVK EEKVAKQLLE KYEELYEKLH KEIAARNHGG GVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1832RKKINLKKKVEKYQDRMVTYSRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap905731
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875741.11e-125agamous-like MADS-box protein AGL61
TrEMBLD7LMQ21e-124D7LMQ2_ARALL; Uncharacterized protein
STRINGscaffold_501435.11e-124(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-45AGAMOUS-like 64