PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 904950 | ||||||||
Common Name | ARALYDRAFT_904950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 23115.1 Da PI: 4.835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.7 | 8.5e-18 | 8 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel..v 100 lp Gf+F+Pt e+ +++Lkkk+ g+ + + +v +e+ di++ +P+dLp +e++wy+F+++++ n++t W g++++vl k+++ v 904950 8 LPIGFKFRPTRFEMANNFLKKKALGQAIIARRVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRN--------NQVTC-NLWTPIGEETNVLYPKNRQlvV 99 699************************99989999989***********43..4789******9855........45544.68***********985554348 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 +++ +++ +++++ e+ dW+++e +l 904950 100 ATRRRFTLVEKDEE--EEYDWFLDEISL 125 89999999865554..59******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-21 | 7 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.44 | 8 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-9 | 9 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEPIYRPLPI GFKFRPTRFE MANNFLKKKA LGQAIIARRV PEECHDIFSR HPRDLPGYPR 60 EEHWYYFCRK RNNQVTCNLW TPIGEETNVL YPKNRQLVVA TRRRFTLVEK DEEEEYDWFL 120 DEISLRQTVS FSDWVFCHIK GKKIKPEFDY LPINESESES ESEDEESVDN NPAEILDLLR 180 EQDENVLPPP PPSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 904950 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877033.1 | 1e-142 | NAC domain-containing protein 104 | ||||
TrEMBL | D7LLY9 | 1e-140 | D7LLY9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_500654.1 | 1e-141 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 4e-74 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 904950 |
Entrez Gene | 9311438 |