PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 904152 | ||||||||
Common Name | ARALYDRAFT_904152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 40796.2 Da PI: 8.0356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 7.9e-13 | 177 | 227 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+++P++ + ++ + a+i+ A++++k L 904152 177 QRMTHIAVERNRRRQMNVHLNSLRSIIPPS---YIQRGDQASIVGGAIDFVKIL 227 79****************************...9***************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.50E-9 | 175 | 232 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-15 | 176 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.729 | 176 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 177 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-10 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 182 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MERSIQGQNK LCCLDQKLNV RRSLQVQGTV EDHQSFALEE DQLSTPSLLQ DTTIPFLQML 60 QQSEDPSPFL SFKDPSFLAL LSLQTLEKPW ELENYLPHEV PEFHSPIHSE TNHYYHNPSL 120 EGANEAISSK ELPFNPLENA NPRRKRKNNN LATLMTREKR KRRRTKPTKN IEEIESQRMT 180 HIAVERNRRR QMNVHLNSLR SIIPPSYIQR GDQASIVGGA IDFVKILEQH LQSLEAQKRT 240 QQSDDNKEQI PELRDISSNK LRASSKEEQS SKLQIEATVI ESHVNLKIQC RRKQGLLLRS 300 IILLEKLRFT VLHLNITSPT NTSVSYSFNL KMEDDCNLGS ADEITAAIRQ IFDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 163 | KRKNNNLATLMTREKRKRRR |
2 | 158 | 163 | KRKRRR |
3 | 159 | 163 | RKRRR |
4 | 159 | 164 | RKRRRT |
5 | 159 | 166 | RKRRRTKP |
6 | 177 | 188 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 904152 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB678434 | 0.0 | AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880266.1 | 0.0 | transcription factor bHLH70 | ||||
Swissprot | O81037 | 0.0 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | D7LF90 | 0.0 | D7LF90_ARALL; Uncharacterized protein | ||||
STRING | scaffold_403653.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 904152 |
Entrez Gene | 9316333 |
Publications ? help Back to Top | |||
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