PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904148
Common NameARALYDRAFT_904148
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 356aa    MW: 39716.4 Da    PI: 6.1872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904148genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.7e-52151431128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
             +ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s +g+ +
  904148  15 VPPGFRFHPTEEELLQYYLRKKVNSIEIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS-NGRRI 115
             69****************************.99**************962433332455**************************************.999** PP

     NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
             g++ktLvfykgrap+g+k+dW+mheyrl
  904148 116 GMRKTLVFYKGRAPHGQKSDWIMHEYRL 143
             **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5910179IPR003441NAC domain
PROSITE profilePS5100556.5615179IPR003441NAC domain
PfamPF023657.8E-2816143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSKSMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVNSI EIDLDVIRDV DLNKLEPWDI  60
QEMCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKIIYS NGRRIGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNIISP EDVTVHEVVN IIGEASQDEG WVVCRIFKKK  180
NLHKTLNSPV GGASLSGGGD MGTSSQIFNE DTLEQFLELM GRSCKEELNL DSFMKLPNLE  240
SPNSQTINNC HVSSPDTNHN IHVSNVVDSS FVTSWAALDR LVASQLNGPT SYSIAAVDES  300
HVDQDHLALP SLNRSASYHA GLTQEYTLEM ELWNTTTSSL PSSPGPFCHV SNGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-481218114167NO APICAL MERISTEM PROTEIN
1ut4_B4e-481218114167NO APICAL MERISTEM PROTEIN
1ut7_A4e-481218114167NO APICAL MERISTEM PROTEIN
1ut7_B4e-481218114167NO APICAL MERISTEM PROTEIN
3swm_A5e-481218117170NAC domain-containing protein 19
3swm_B5e-481218117170NAC domain-containing protein 19
3swm_C5e-481218117170NAC domain-containing protein 19
3swm_D5e-481218117170NAC domain-containing protein 19
3swp_A5e-481218117170NAC domain-containing protein 19
3swp_B5e-481218117170NAC domain-containing protein 19
3swp_C5e-481218117170NAC domain-containing protein 19
3swp_D5e-481218117170NAC domain-containing protein 19
4dul_A4e-481218114167NAC domain-containing protein 19
4dul_B4e-481218114167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap904148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0204130.0BT020413.1 Arabidopsis thaliana At2g46770 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882089.20.0NAC domain-containing protein 43
SwissprotQ84WP60.0NAC43_ARATH; NAC domain-containing protein 43
TrEMBLD7LF860.0D7LF86_ARALL; Uncharacterized protein
STRINGscaffold_403649.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.10.0NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]