PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903940
Common NameARALYDRAFT_903940
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 263aa    MW: 28710.8 Da    PI: 8.2977
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18179213135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  903940 179 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 213
             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-942262IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.61E-14173235No hitNo description
SMARTSM004014.8E-15173223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227177209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-13177211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-13178225No hitNo description
PfamPF003207.3E-16179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDVYGLSSPD LLRIDDLLDF SNEDIFSASS SGGSTAATSS SSFPPPQNPN FHHHHLPSSA  60
DHHSFLHDIC VPSDDAAHLE WLSQFVDDSF ADFPANPLGG TMTSAKTETS FPGKPRSKRS  120
RAPAPFAGTW SPMPTESEHH QLHSAAKFKP KKEHSGGGGG GRHQSSSSES AEGGGMRRCT  180
HCASEKTPQW RTGPLGPKTL CNACGVRFKS GRLVPEYRPA SSPTFVLTQH SNSHRKVMEL  240
RRQKEVMRQP QQVQLHHHHH PF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap903940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171340.0AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBankBT0009210.0BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBankY136490.0Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880154.10.0GATA transcription factor 2
SwissprotO497411e-156GATA2_ARATH; GATA transcription factor 2
TrEMBLD7LBV00.0D7LBV0_ARALL; GATA transcription factor
STRINGscaffold_403441.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-123GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]