PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 903896 | ||||||||
Common Name | ARALYDRAFT_903896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 84aa MW: 9321.07 Da PI: 10.251 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.7 | 2.8e-26 | 4 | 79 | 7 | 81 |
DUF260 7 vlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 + rrkC+k+C++ap+f eq +++fa+vhk+FGasn + +l +lp ++r da+ +l+yeA ar+r PvyG+vg+++ 903896 4 FWRRKCVKGCIFAPCFDPEQgTARFAAVHKVFGASNASMILLRLPLHKRLDAVVTLCYEAMARLRGPVYGSVGHLF 79 679*************666659***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.812 | 1 | 83 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-25 | 4 | 79 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MPHFWRRKCV KGCIFAPCFD PEQGTARFAA VHKVFGASNA SMILLRLPLH KRLDAVVTLC 60 YEAMARLRGP VYGSVGHLFP PQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-24 | 4 | 78 | 17 | 90 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-24 | 4 | 78 | 17 | 90 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 903896 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473856 | 8e-93 | AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds. | |||
GenBank | AC002387 | 8e-93 | AC002387.3 Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence. | |||
GenBank | CP002685 | 8e-93 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296305.1 | 2e-44 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 3e-45 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | D7LLP5 | 4e-55 | D7LLP5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_403397.1 | 6e-56 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 1e-47 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | 903896 |
Entrez Gene | 9318041 |