PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 902147 | ||||||||
Common Name | ARALYDRAFT_902147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20819.9 Da PI: 10.0021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 34 | 75 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++++eL+ l+P++ +K Ka+i++ + YI++L 902147 34 TERERRVHFNDRIFELKNLIPNP-----TKGGKASIVQDGIVYINEL 75 6*********************9.....89999***********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.39E-8 | 24 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 24 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 24 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.116 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-5 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-7 | 34 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDINGGVNVM YFEGFNNGVT RKGRGSRKSR TFPTERERRV HFNDRIFELK NLIPNPTKGG 60 KASIVQDGIV YINELRRLVS ELKSLVEKKR CGGRHKNIDS RNTIYVTGEI EHPFSKMRLN 120 HDEENMEKKP ESDMIDQCSW LERNSKVIQV YVRVIDDEVT IKVVQKKKIN CLFFCLQSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 902147 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006593 | 4e-53 | AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence. | |||
GenBank | CP002685 | 4e-53 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884716.1 | 1e-119 | transcription factor bHLH138, partial | ||||
Swissprot | Q84TK1 | 1e-52 | BH010_ARATH; Transcription factor bHLH10 | ||||
TrEMBL | D7LD04 | 1e-129 | D7LD04_ARALL; Uncharacterized protein | ||||
STRING | scaffold_401648.1 | 1e-130 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30362 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 5e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 902147 |
Entrez Gene | 9315379 |
Publications ? help Back to Top | |||
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