PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 901864 | ||||||||
Common Name | ARALYDRAFT_901864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 1322aa MW: 150316 Da PI: 5.4998 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.6 | 3.3e-112 | 321 | 694 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 l++ L++cA+avs +d + a+ lL+++++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts +s+ l+a++++ v+P+ k++ + aN+ I+ 901864 321 LRTMLVSCAQAVSINDRRTADDLLSQIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---TSDMLKAYQTYISVCPFKKIAIIFANHSIM 420 5789**************************************************************9999...89***************************9 PP GRAS 104 eavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 + ++++ +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g +e + etg+rLak++++++vpfe+n+ +a+++e+++le+L++k+gE + 901864 421 RLASTAnaKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNVPFEYNA-IAQKWETIKLEDLKLKEGEFV 522 9877766699****************************************99*****************************.7******************** PP GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 aVn+ ++ +llde+v+++s+rd+vLkl+++++P+v++ ++n++ F++rf e l +ys+lfd+ +++l re+ r++ E+e+ grei+nvvaceg+er 901864 523 AVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTER 625 ******************************************************************************************************* PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +er e++++W++r ++aGF+++pl+++ +++ kll++ + +++ v+++ ++l++gWk+r ++ S+W 901864 626 VERPESYKQWQARAMRAGFRQIPLDKELVQKLKLLVESGYkTKEFDVDQDCHWLLQGWKGRIVYGSSVW 694 ************************************99888999************************* PP | |||||||
2 | GRAS | 348.6 | 1e-106 | 941 | 1318 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkfshltaNq 100 ++lL++cA+a+s+gd++ a +L ++++++sp gd+ qRla++f++AL+arl++ +++ + + ++ +ts k+ +++l+a++++ sP++++ ++ + 901864 941 RTLLTHCAQAISTGDKTTALDFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGsTGPMIQNYYNAITTSLKDtAADTLKAYRVYLSSSPFVTLMYFFSIR 1041 689***************************************************5555555555555555444499************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 +Ile ++ + +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g +e++eetg+rLa+++++++vpfe+++++++++e++ +e+L+++p+ 901864 1042 MILEVAKDAPVLHIVDFGILYGFQWPMFIQYISGRNDVPRKLRITGIELPQCGfrPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIGIEDLDIRPD 1142 ***************************************************9999****************************999*************** PP GRAS 200 EalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+laVn l+l++l de++s e+ +rd+vLkl+++++P+v++++ + + n++ F rf ea+++ysalfd+++++lpr+++eri Ere+ gre++nv+a 901864 1143 EVLAVNAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPDVFIHTVVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIA 1243 ***********************99**************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ce+a+r+er et+++W+ r+ +aGF++ p++ + ++ + l+k + + v+e+s++l++gWk+r+L++ S+W 901864 1244 CEEADRVERPETYRQWQVRMVRAGFRQKPIKPELVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYASSCW 1318 *******************************************9998999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.811 | 295 | 674 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-109 | 321 | 694 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 60.663 | 914 | 1298 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-104 | 941 | 1318 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1322 aa Download sequence Send to blast |
MGSYSAGFPG SLDWFDFPGL GNGFYLNDQP LLETGSVPPP PEPYSQQSLA SADADFSDSV 60 LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YAVDDSDQPL TTTSLAQLVS 120 SPDGSSYASS ITTTSSDSQW SFDCLENNRP SSWLQTPIPS NFVFQSTSTR TSPQSVVGSG 180 NAVFGSSFSG DLASNMFNDS ELALQFKKGM EEASKFLPKS SQLDNSVPYR LTGKKSHWRE 240 DEHLAEERSR KQSAVYVDET DELTEMFDKI LIFGEAKEQP VCILNENFPK EPAKASSFGK 300 SHKSEKPDAS GNSYTKETPD LRTMLVSCAQ AVSINDRRTA DDLLSQIRQH SSSYGDGTER 360 LAHYFANSLE ARLAGIGTQV YTALSSKKTS TSDMLKAYQT YISVCPFKKI AIIFANHSIM 420 RLASTANAKT IHIIDFGISY GFQWPSLIHR LAWRRGSSCK LRITGIELPQ RGFRPAEGVI 480 ETGHRLAKYC QKFNVPFEYN AIAQKWETIK LEDLKLKEGE FVAVNSLFRF RNLLDETVAV 540 HSPRDTVLKL IRKIKPDVFI PGILSGSYNA PFFVTRFREV LFHYSSLFDM CDTNLTREDP 600 MRVMFEKEFY GREIMNVVAC EGTERVERPE SYKQWQARAM RAGFRQIPLD KELVQKLKLL 660 VESGYKTKEF DVDQDCHWLL QGWKGRIVYG SSVWVPLFIQ TEYFDGNPNF LTDPMEDQYP 720 PPSDTLLKYV SEILMEESNG DYKQSMFYDS LALRKTEEML QQVITDSQNQ SFSPDSMITN 780 SWDASGSIES AYSADLQIGL PVDEFMVKSV FSDAESALQF KKGVEEASKF LPNSDQWVIN 840 LDIERPERRG LVKEEMGLDQ LRIKKNHERE IILDFEEVRS SKQFASNIED GKITEMFDKV 900 LLLDGECDPP TLLDSEIQAI RSSKNRGGKG KKKKCQVVDF RTLLTHCAQA ISTGDKTTAL 960 DFLLQIRQQS SPLGDAGQRL AHCFANALEA RLQGSTGPMI QNYYNAITTS LKDTAADTLK 1020 AYRVYLSSSP FVTLMYFFSI RMILEVAKDA PVLHIVDFGI LYGFQWPMFI QYISGRNDVP 1080 RKLRITGIEL PQCGFRPAER IEETGRRLAE YCKRFNVPFE YKAIASQNWE TIGIEDLDIR 1140 PDEVLAVNAG LRLKNLQDET GSEENCPRDA VLKLIRNMNP DVFIHTVVNG SFNAPFFISR 1200 FKEAVYHYSA LFDMFDSTLP RDNKERIRFE REFYGREAMN VIACEEADRV ERPETYRQWQ 1260 VRMVRAGFRQ KPIKPELVEL FREKLKKWRY HKDFVVDENS KWLLQGWKGR TLYASSCWVP 1320 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-47 | 325 | 1318 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 901864 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005315 | 0.0 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639734.1 | 0.0 | scarecrow-like protein 33 isoform X4 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | D7LKB7 | 0.0 | D7LKB7_ARALL; Scarecrow transcription factor family protein | ||||
STRING | scaffold_401365.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 901864 |
Entrez Gene | 9315266 |