PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 901108 | ||||||||
Common Name | ARALYDRAFT_901108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19471.5 Da PI: 7.0151 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.8 | 5.7e-13 | 28 | 59 | 18 | 49 |
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 ++KKA+EL++LCd+e +iifs+ g+++ + 901108 28 SCLFKKASELCTLCDVETVIIIFSQGGNFFSF 59 679*************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0043 | 22 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-13 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.026 | 24 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-12 | 25 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-6 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-6 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLITTTNKDS SIAFLLCPGV QLSSKSSSCL FKKASELCTL CDVETVIIIF SQGGNFFSFG 60 HPNINVLLDH SRGRVLRDNN TNLAESNMKL YIQMLNESLI EHFLAGINIR KFLNVDADAV 120 GPSTNLKMTL FEKLEEGFLC QGSNHGDKIG YLTELRMLTY KFIDNHKGKF LLEV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 901108 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D7LJI5 | 1e-124 | D7LJI5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400609.1 | 1e-124 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 2e-28 | AGAMOUS-like 28 |
Link Out ? help Back to Top | |
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Phytozome | 901108 |
Entrez Gene | 9314885 |