PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 901071 | ||||||||
Common Name | ARALYDRAFT_901071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 17453.2 Da PI: 10.0429 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.2 | 5.8e-20 | 11 | 56 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgkly 47 i+ +s rqvtfskRr+ ++KKA+EL++L C+ae+a+i+fs+ +k + 901071 11 IKKESHRQVTFSKRRASLFKKASELCTLmCGAEIAIIVFSPAQKPF 56 8999***********************88************99855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-26 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.96 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-23 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-22 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-9 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MGRQKIPLVK IKKESHRQVT FSKRRASLFK KASELCTLMC GAEIAIIVFS PAQKPFSFKH 60 TSVESVLDRH LSQNNLPSTQ TQQHRGNVAP SCELNLRLTE ILNESEEEKK KGQAMEDMRK 120 VSARRPMINW WEAPVEEMNM VQLQEMKSAL ES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6bz1_A | 4e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6bz1_B | 4e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6bz1_C | 4e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
6bz1_D | 4e-15 | 1 | 86 | 1 | 95 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 901071 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883034.1 | 7e-81 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-80 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LIY7 | 1e-108 | D7LIY7_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400572.1 | 1e-109 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-83 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | 901071 |
Entrez Gene | 9314868 |
Publications ? help Back to Top | |||
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