PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901062
Common NameARALYDRAFT_901062
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 632aa    MW: 71981.7 Da    PI: 9.4854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901062genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15127212196
             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ffk l     + s+ l++p  f+ ++ +g + e+kt  l++  s  +Wevk+  ++++    lt+GWkeF+ +++L+ gD+vvF+ +++++f  +v++
  901062 127 FFKPL--LPGFHSH-LTIPVAFFLKNiEGRH-EQKTAELRSdASKITWEVKI--DGQR----LTDGWKEFALSHDLRIGDIVVFRQERDMCF--HVTM 212
             66666..5667777.*******999975554.55789998868889******..9888....***********************8888999..7765 PP
2B379.92.5e-25257350499
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             + ++ ++l+ +rl lp++f++e+g++k++ ++++l++e+gr+W++ l+ +k+ g++++++GW++F++angL++g +++Fkl++ +++++v+++f+k
  901062 257 ANVTVSSLRDDRLNLPRSFVRENGLDKRC-VEIVLMNEKGRTWTLDLKGNKSYGTTYIKRGWRSFCHANGLRAGSIFTFKLIK-KGKTPVLRLFSK 350
             567889999*****************866.8****************99999999***************************9.88889**99987 PP
3B373.52.6e-23398488496
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             + ++ ++l+ ++l+lpk+f++++g++++++ +++l++e+grsW + l+ +++ g++++++GW++F++ ngL++g f +Fkl+++ e++lv+++
  901062 398 ANITRSSLRYDILYLPKRFMRANGLDTRCG-EMILMNEKGRSWALDLKRKNSCGTTYIKRGWRSFCRVNGLRAGSFYTFKLIQN-ERTLVLRL 488
             567899999*****************9987.****************98888888***************************95.55567666 PP
4B356.45.3e-185446251699
             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
              +lp +f++ +g+++   k++++ d++g +W+  l++++ ++r+ l +GWkeF++ang+k g++++++l+++s+++ v+k+++k
  901062 544 QTLPIPFTKVNGIQN--AKKMSFLDKHGVKWSTSLRFEQDRQRMRLVGGWKEFCDANGVKIGESIMLELIWESDKSSVLKFCSK 625
             489*****9999885..558****************************************************999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-23124229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.519124216IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-19125223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-15126213No hitNo description
SMARTSM010191.8E-22127216IPR003340B3 DNA binding domain
PfamPF023625.3E-10135209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-24247346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-22252353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.412254351IPR003340B3 DNA binding domain
CDDcd100171.16E-24254349No hitNo description
SMARTSM010191.3E-33255351IPR003340B3 DNA binding domain
PfamPF023621.5E-23256350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22388487IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21393494IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.89395492IPR003340B3 DNA binding domain
CDDcd100174.51E-21395488No hitNo description
SMARTSM010194.8E-31396492IPR003340B3 DNA binding domain
PfamPF023621.9E-21397489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16520625IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-15524623No hitNo description
SMARTSM010192.6E-16530626IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-17545626IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-17545625IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196546625IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAKPAKGKNK SLLDCSPLLE ELPQSPDCRN RGNPEANPRK CNMAKPAKDK NKSLLDCSPL  60
LEELPQSPDC RNRGNPEANP RKCNMAKPAK DKNKSLLDCS PLLEELPQSP DCKLKDLGIL  120
RMAKQHFFKP LLPGFHSHLT IPVAFFLKNI EGRHEQKTAE LRSDASKITW EVKIDGQRLT  180
DGWKEFALSH DLRIGDIVVF RQERDMCFHV TMLGPSCCEI QYGSCLDNKN NLGKIQRKKN  240
PRRETESSSL DPSCFVANVT VSSLRDDRLN LPRSFVRENG LDKRCVEIVL MNEKGRTWTL  300
DLKGNKSYGT TYIKRGWRSF CHANGLRAGS IFTFKLIKKG KTPVLRLFSK EPEEQANEAS  360
LSPELESNED SNLGKIQRRK NPSRETESSS LDPSCFVANI TRSSLRYDIL YLPKRFMRAN  420
GLDTRCGEMI LMNEKGRSWA LDLKRKNSCG TTYIKRGWRS FCRVNGLRAG SFYTFKLIQN  480
ERTLVLRLVP KEPEEEEEKA NVESLSTEPS DEESSQDEKS SQECSKTMEK KSILIHLRCL  540
NLSQTLPIPF TKVNGIQNAK KMSFLDKHGV KWSTSLRFEQ DRQRMRLVGG WKEFCDANGV  600
KIGESIMLEL IWESDKSSVL KFCSKVMQEI K*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885365.10.0B3 domain-containing protein REM14 isoform X1
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLD7LIX60.0D7LIX6_ARALL; Uncharacterized protein
STRINGscaffold_400563.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]