PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901047
Common NameARALYDRAFT_901047
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 596aa    MW: 68129.4 Da    PI: 9.9972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901047genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-1569154196
             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ffk l     + s+ l++p  f+ ++ +g + e+kt  l++  s  +Wevk+  ++++    lt+GWkeF+ +++L+ gD+vvF+ +++++f  +v++
  901047  69 FFKPL--LPGFHSH-LTIPVAFFLKNiEGRH-EQKTAELRSdASKITWEVKI--DGQR----LTDGWKEFALSHDLRIGDIVVFRQERDMCF--HVTM 154
             66666..5667777.*******999975554.55789998868889******..9888....***********************8888999..7765 PP
2B376.62.8e-24199290497
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             + ++ ++l+ +rl lp++f++e+g++++++ +++l++e+gr+W++ l+ +k+ +++++++GW++F++angL++g +++Fkl++ +++++v+++ 
  901047 199 ANVTVSSLRDDRLNLPRSFVRENGLDTRCG-EIVLMNEKGRTWTLDLKGNKSYRTTYIKQGWRSFCHANGLRAGSIFTFKLIQ-KGKTPVLRLS 290
             567889999*****************9987.****************99999999**************************99.7777888765 PP
3B377.71.2e-24344434496
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             + ++ ++l+ ++l+lpk+f++e+g++++++ +++l++e+grsW + l+ +++ g++++++GW++F++angL++g f +Fkl+++ e++lv+++
  901047 344 AHITRSSLRYDILYLPKRFMRENGLDTRCG-EMILMNEKGRSWALDLKRKNSCGTTYIKRGWRSFCRANGLRAGSFYTFKLIQN-ERTLVLRL 434
             567899999*****************9987.****************98888888***************************95.55567666 PP
4B363.82.6e-20493589199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f++v+++ ++ +++rl+lp +f++ +g+++   k++++ d++g +W+  l++++ ++r+ l +GWkeF++ang+k g++++++l+ + ++++v+k+++k
  901047 493 FVTVTLTLYNVSLSRLTLPIPFTKVNGIQN--AKKMSFLDKHGVKWSTSLRFEQDRQRMRLVGGWKEFCDANGVKIGESIMLELVLEADKSFVLKFCSK 589
             788999*****************9999885..558************************************************9866666669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.51966158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-2366171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1967165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.06E-1568155No hitNo description
SMARTSM010191.8E-2269158IPR003340B3 DNA binding domain
PfamPF023624.8E-1077151IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-24189291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-21194295IPR015300DNA-binding pseudobarrel domain
CDDcd100177.07E-22196289No hitNo description
PROSITE profilePS5086315.975196292IPR003340B3 DNA binding domain
SMARTSM010191.8E-32197293IPR003340B3 DNA binding domain
PfamPF023621.7E-22198290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-23334433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-22339440IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-22341434No hitNo description
SMARTSM010193.4E-31341438IPR003340B3 DNA binding domain
PROSITE profilePS5086316.243341438IPR003340B3 DNA binding domain
PfamPF023621.1E-22344435IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19485587IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20490590IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-16492588No hitNo description
PfamPF023626.2E-20493589IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565493590IPR003340B3 DNA binding domain
SMARTSM010194.5E-24493590IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAPKKKTPTM VWRNRGNPEA NPRKCNMAKP AKDKNKSLLD CSPLLEELPQ SPDCKLKDLG  60
ILRMAKQHFF KPLLPGFHSH LTIPVAFFLK NIEGRHEQKT AELRSDASKI TWEVKIDGQR  120
LTDGWKEFAL SHDLRIGDIV VFRQERDMCF HVTMLGPSCC EIQYGSCLDN KNNLGKIQRK  180
KNPRRETESS SLDPSCFVAN VTVSSLRDDR LNLPRSFVRE NGLDTRCGEI VLMNEKGRTW  240
TLDLKGNKSY RTTYIKQGWR SFCHANGLRA GSIFTFKLIQ KGKTPVLRLS PKEPEEQANE  300
VSLSPELESD EDTNLGKIQR RKKRKKNPSR DIESSSLDPS CFVAHITRSS LRYDILYLPK  360
RFMRENGLDT RCGEMILMNE KGRSWALDLK RKNSCGTTYI KRGWRSFCRA NGLRAGSFYT  420
FKLIQNERTL VLRLVPKEPE EEEEKANVES LSTEPSDEES SQDEKSSQEC SKTMEKKSIL  480
IQKASSSASQ SRFVTVTLTL YNVSLSRLTL PIPFTKVNGI QNAKKMSFLD KHGVKWSTSL  540
RFEQDRQRMR LVGGWKEFCD ANGVKIGESI MLELVLEADK SFVLKFCSKV MQEIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318325QRRKKRKK
2319325RRKKRKK
3321325KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap901047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885365.10.0B3 domain-containing protein REM14 isoform X1
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLD7LIW00.0D7LIW0_ARALL; Uncharacterized protein
STRINGscaffold_400548.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]