PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899797

Common Name

ARALYDRAFT_899797

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 331aa MW: 38385.8 Da PI: 9.4262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899797	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ + H+++H 899797 245 YTCPKCNGVFDTSQKFAAHMSSH 267 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0096	245	267	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	245	272	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	247	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MSSIPNKFNL HCDDTNNRGF SSKQMNQNSK IVQSMFITSD HTNHGDLFSS SPSLTFFQNS 60 HVSSSSFGFK NSHVKNQMMR RNIISGDNYF PIKNNPHFTR VSFTQSITNR YTAIVPTNTL 120 DIVQYDIQRV KRAMYSKTNI WNPKFFPPNI FDKQCELLNP KPLNVIVPRQ DSAYSQHLDM 180 FSLSSKHNYN QRVPQYGSFL KKILKPTKFF GTSTDYIESE ENEKSNDDQY DGRTHSLPYE 240 KYGPYTCPKC NGVFDTSQKF AAHMSSHYKN ETSEEREHRL RAKNKRKYCK LNHEIHGESQ 300 KSKQEDVVNN GEKNDDKAFQ HLVIVKEELD *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899797

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493548	0.0	AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBank	AC006248	0.0	AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885976.1	0.0	uncharacterized protein LOC9319985
TrEMBL	D7L4F8	0.0	D7L4F8_ARALL; Zinc finger family protein
STRING	scaffold_303767.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	0.0	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	899797
Entrez Gene	9319985