PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 898397
Common NameARALYDRAFT_898397
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 330aa    MW: 37775.7 Da    PI: 9.4392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
898397genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-2388178395
             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
              + ++s++ + + l lp +f++++g +++++ +++l +e+g+sW+v l+ +k+ g++++++GW++F++angL++g +++Fkl++r +++l+++
  898397  88 VANVTSSNIRYDSLNLPMRFVRANGVDTRCG-EMILINENGKSWTVDLKRKKSCGTTYIRRGWRSFCHANGLRAGSSFTFKLIQR-GATLCLR 178
             56789*******************9998887.****************98999999**************************995.5545555 PP
2B355.11.4e-172463261799
             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             vlp +f++ ++++k++  +++l d++g +W++kl ++  ++r+ l +GWkeF+ ang+k g++++++l++++e++ v+k+++k
  898397 246 VLPIPFTKVNDIVKAK--KMSLLDKHGVKWSIKLWFEVERKRMRLVGGWKEFCYANGVKIGESIILELIWETEESSVLKFCSK 326
             89*****999999665..8***************88999999****************************9888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-2380173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-2184183IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-2386179No hitNo description
PROSITE profilePS5086316.04586183IPR003340B3 DNA binding domain
SMARTSM010195.3E-3187183IPR003340B3 DNA binding domain
PfamPF023623.0E-2287179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17211326IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.2E-12229327IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407230326IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-16245325IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-15246324No hitNo description
PfamPF023623.8E-16246326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLKELRDLQR FAEIVSPPAG RKWVSEELAV ISESKEVAAD MITDTVLDQM CSYSGFSLFF  60
SGNNQRTKKV RKNPREEAES SLDLSYFVAN VTSSNIRYDS LNLPMRFVRA NGVDTRCGEM  120
ILINENGKSW TVDLKRKKSC GTTYIRRGWR SFCHANGLRA GSSFTFKLIQ RGATLCLRLS  180
PRELKEEDCL SEPETNQDER SSQECTKRKF KNCFVTVTLT PYNIEQSKLV LLILHSCLPR  240
LNVSQVLPIP FTKVNDIVKA KKMSLLDKHG VKWSIKLWFE VERKRMRLVG GWKEFCYANG  300
VKIGESIILE LIWETEESSV LKFCSKVHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap898397
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888131.10.0putative B3 domain-containing protein REM15
SwissprotO230761e-88REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLD7LAU30.0D7LAU3_ARALL; Uncharacterized protein
STRINGscaffold_302367.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]