PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895674
Common NameARALYDRAFT_895674
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 573aa    MW: 62519.7 Da    PI: 6.0274
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895674genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.8e-23119220199
             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f k+ltpsd+++ g +++p+ +a++       +++++  ++l ++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++   e++++v+
  895674 119 FAKILTPSDANNGGGFSVPRFCADSVfppldfQIDPPV-QKLYITDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFM--KKAADEMFMGVR 218
             89*****************9999999*****9666655.49************************************************..446777889998 PP

             -S CS
      B3  98 rk 99 
             r+
  895674 219 RT 220
             86 PP
2Auxin_resp88.31.4e-29274356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+++ +Fev Y+P a++seFvv++e+ve++++v +++G+R+kma+etedss++++ +G+v+++ + ++  W++S+W++L+
      895674 274 AINRAAKGLPFEVAYYPTAGWSEFVVRAEDVESSMSVFWTPGTRVKMAMETEDSSRITWfQGIVSSTYQ-ETGPWRGSPWKQLQ 356
                 678999*****************************************************9999999999.888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-32112221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-27113224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323119221IPR003340B3 DNA binding domain
SMARTSM010191.3E-18119221IPR003340B3 DNA binding domain
CDDcd100179.69E-20119215No hitNo description
PfamPF023628.2E-21119219IPR003340B3 DNA binding domain
PfamPF065073.2E-24274356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSPPSATAGD INHRQVDPRI WRACAGASVQ IPLLYSRVYY FPQGHVEHCC PLISTLPSST  60
SPVPCLITSI QLLADPITDE VFAHLVLQPV TQEQFTPTNY SRFGRYDGDV DDNNKVTTFA  120
KILTPSDANN GGGFSVPRFC ADSVFPPLDF QIDPPVQKLY ITDIHGAVWD FRHIYRGTPR  180
RHLLTTGWSK FVNSKKLIAG DSVVFMKKAA DEMFMGVRRT PISSSGGGSS YYGGDEYNGY  240
YSQSSVAKED DGSAKKTFRR SGKGKLTAEA VTEAINRAAK GLPFEVAYYP TAGWSEFVVR  300
AEDVESSMSV FWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD  360
EPEILQNVKR VNPWQVEIVA NATQLHATFP PAKRLKYPQP GGFLSGDDGD IPYSQRGLSS  420
AAAPDPSPYM FPYSTFPAGM QGARQYDFGS FNPTGFIGEN PPQSCTNNFF SPLPTGLGKV  480
STEMNFGSPP SDNLSPNSNT TNLSSGNDLV GNRAPISAKP NSIRLFGKTI NVQEHSESGP  540
AESGLCEEDG SKESSDNETQ LSLSHGRGPP SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-641637751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap895674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0027490.0BT002749.1 Arabidopsis thaliana clone C104833 auxin response factor ARF17 (At1g77850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891389.10.0auxin response factor 17 isoform X1
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLD7KV470.0D7KV47_ARALL; Auxin response factor
STRINGscaffold_202748.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]