PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 895087 | ||||||||
Common Name | ARALYDRAFT_895087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25677.3 Da PI: 9.0413 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.8e-20 | 57 | 100 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + 895087 57 ENRRQVTFSKRRFGLFKKAAELSVLCGAQIGIITFSRVDRIYSF 100 579***********************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-26 | 44 | 103 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.628 | 44 | 104 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-22 | 45 | 115 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-19 | 46 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-20 | 56 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-19 | 66 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-19 | 81 | 102 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEDGEAEAST ITCLPTTKQN PLQNPNLLVN PKKETKLKTP KTTKGRQKIE IKKIILENRR 60 QVTFSKRRFG LFKKAAELSV LCGAQIGIIT FSRVDRIYSF GNVDSLIDKY LRKTPVMLRS 120 HPGGNVANGE EDNDGLMWWE RAVESVPEED MEEYKKALSV LRENLLTRIY QMSGDRTVEN 180 LPAFPNEMAM ADWKLTNENL MARNDRGYAG NGGDLEFAFM SQNGRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 45 | 113 | 2 | 68 | MEF2C |
5f28_B | 1e-15 | 45 | 113 | 2 | 68 | MEF2C |
5f28_C | 1e-15 | 45 | 113 | 2 | 68 | MEF2C |
5f28_D | 1e-15 | 45 | 113 | 2 | 68 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 895087 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016529 | 0.0 | AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence. | |||
GenBank | AY141235 | 0.0 | AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds. | |||
GenBank | BT025647 | 0.0 | BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446421 | 0.0 | DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888870.1 | 1e-169 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7KZC6 | 1e-167 | D7KZC6_ARALL; MADS-box protein | ||||
STRING | scaffold_202161.1 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-131 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 895087 |
Entrez Gene | 9323496 |