PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895047
Common NameARALYDRAFT_895047
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 379aa    MW: 39949.3 Da    PI: 8.9844
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895047genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1281e-39621604102
     TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqk 102
              k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++   ++s  s++ s+  ++++++ +s  s +
  895047  62 VKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStL-NASLRSGGGSTLFSQSSKSSSSPLSFH 160
             589****************************************************************99843.333333332333223333323333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3666173IPR005333Transcription factor, TCP
PROSITE profilePS5136928.10966120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEIRTNQNSS VAEATLQLNS GDKPSPGSIP FISGQHGNVS TSATSSTSTS SGSALAVVKS  60
TVKKPTKDRH TKVDGRGRRI RMPAMCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAS  120
TGTGTIPANF STLNASLRSG GGSTLFSQSS KSSSSPLSFH STGMSLYEDN NGSNGSSVDP  180
SRKLLNSAAN AAVFGFHHQM YPPIMATERN PSNLVKPYRE DYFKEPSSAA EPSESSQKAG  240
QFQDQELGPG RGTANVVPQP MWAVAPGTTN GGSAFWMLPM SGSGGREQLQ QQPGHQMWAF  300
NPGNYPVGTG RVVTAPMGSM MLGGQQLGLG VAENNMAAAM RGSRGDGLAM TLDQHQHQLQ  360
HQEPNQTQAS ENGGDDKK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap895047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0692730.0AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence.
GenBankAY0807760.0AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankAY1504880.0AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887407.10.0transcription factor TCP22
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLD7KZ870.0D7KZ87_ARALL; Uncharacterized protein
STRINGscaffold_202121.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.10.0TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]