PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892618
Common NameARALYDRAFT_892618
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 304aa    MW: 34972.7 Da    PI: 9.3551
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892618genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573123.88.1e-39123216297
  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
             +fqr wse+DeivlLqG+idfk+++gksp+dd++af+++vk+ isf++++sq+++KirrLK+K+ +k++k    +e+sf+k+hd k+f+lsk iW+
  892618 123 YFQRKWSEDDEIVLLQGMIDFKNDKGKSPYDDMTAFIDTVKNIISFQANQSQFTTKIRRLKDKYLRKRNK--GADEKSFAKAHDLKCFQLSKLIWE 216
             8********************************************************************9..889999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-30124216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKGITKLFVS RSLKSHMAKK NKKRSQPENK LSKPKSKRLK PEEDPSTVKR CLLEEPPTKK  60
RSPPLENPLT TESSGDDEEM ATEEEGHESG SSSEEEGKEA GSSSEEEEQK DPGKNYPPTK  120
KNYFQRKWSE DDEIVLLQGM IDFKNDKGKS PYDDMTAFID TVKNIISFQA NQSQFTTKIR  180
RLKDKYLRKR NKGADEKSFA KAHDLKCFQL SKLIWESTKV KEESLKPNEE KVLDWFVNSS  240
LVGSIASFGV AEDVVKQRWS MVSMKMKKEL EEKFKLLKEK ESEYLWLKTR FFHEVNSLIA  300
EGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14650TVKRC
2183189DKYLRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap892618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935431e-85AB493543.1 Arabidopsis thaliana At2g01370 gene for hypothetical protein, partial cds, clone: RAAt2g01370.
GenBankAC0062001e-85AC006200.3 Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete sequence.
GenBankAY5013591e-85AY501359.1 Arabidopsis thaliana hypothetical protein (At2g01370) mRNA, complete cds.
GenBankAY6492471e-85AY649247.1 Arabidopsis thaliana hypothetical protein (At2g01370) gene, complete cds.
GenBankCP0026851e-85CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894546.10.0probable transcription factor At2g01370
SwissprotQ9ZU301e-98STKLF_ARATH; Probable transcription factor At2g01370
TrEMBLD7KN540.0D7KN54_ARALL; Uncharacterized protein
STRINGscaffold_105412.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.11e-78DNA-binding storekeeper protein-related transcriptional regulator