PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 890969 | ||||||||
Common Name | ARALYDRAFT_890969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21549.4 Da PI: 5.087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.2 | 1.7e-30 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+l+++Ca++C+ ap+fp+++ +f+ v ++FGa nv k+l +l +e+r++a+++l yeAear rdP++G++g+il+ ++ l++ ++e++++k+e 890969 5 RCAVCKILNETCAQGCISAPHFPSND-TSFEDVSRVFGAMNVRKILVDLnTPEQRQIAANCLRYEAEARRRDPISGCHGMILHHKSILNNIEQEIESTKNE 104 6**********************998.79*******************967888******************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-29 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MASNRCAVCK ILNETCAQGC ISAPHFPSND TSFEDVSRVF GAMNVRKILV DLNTPEQRQI 60 AANCLRYEAE ARRRDPISGC HGMILHHKSI LNNIEQEIES TKNELEPYVG SDRMPKFFDL 120 PMPEDFLTTS ASLDFFVEKI KSLNAVQKNQ LMQLPTADAQ MIMGKIFWNG EDHKKDEDGH 180 GPEADGASTS ACQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-21 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-21 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 890969 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891065.1 | 1e-145 | LOB domain-containing protein 32 | ||||
Swissprot | O49651 | 7e-89 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | D7KJB0 | 1e-144 | D7KJB0_ARALL; Uncharacterized protein | ||||
STRING | scaffold_103763.1 | 1e-144 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 3e-91 | LOB domain-containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | 890969 |
Entrez Gene | 9327127 |