PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890070
Common NameARALYDRAFT_890070
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 1004aa    MW: 113817 Da    PI: 9.8401
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890070genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1415100195
             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
             ffk l     ++++ l +p  f+++h +gk+ ++k  +l++  s ++W vk+  ++      lt+GW++F+ a++L+ gD+v+F+++g++ f  +v+
  890070  15 FFKPL--LQGFRTH-LNIPVAFFSKHvEGKNDQNKIAKLRSdASEKTWLVKM--DGLN----LTDGWEDFAFAHDLRIGDIVIFRHEGEMVF--HVT 100
             66667..6677777.9***********777789999999997889*******..5555....***********************9998888..665 PP
2B3681.4e-21159249799
             .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             ++  l+++rl++p +fa+++g++k +sk++ l++e grsW++ l+++k++ ++++++GW++F+ ang+++g   +Fkl++ +++  +++++r+
  890070 159 SAWGLRNDRLYIPLSFARSNGLNKINSKKIYLYNEAGRSWKLDLKHDKSGMHTYIQSGWRSFCAANGIRQGQY-TFKLVR-KSAPSLIRLCRE 249
             5667899****************************************************************96.***998.666678888875 PP
3B366.83.2e-21272360698
             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             +++++l++++l lp++f+++++++k++s +++l++e+g +W   l  + ++  ++ltkGW +F++ n++k+gD+  Fkl+g + +++v++++ 
  890070 272 VSPSSLRNNQLFLPRSFVSSNSLEKRCS-EIVLKNEQGIKWPSVL--KHYKTVTYLTKGWTSFCQVNRIKAGDSYKFKLVG-TWTKPVLSLCP 360
             678999999***************9998.****************..999999**************************99.78888999886 PP
4B358.51.2e-18456545698
             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             +++++l +++l+lp++f++++g++k++s +++l++e+g++ ++ l++   ++  ++l+kGW +F++ n++k+gD++ Fkl+g +  ++v++++ 
  890070 456 VNPSSLYKDQLYLPRNFVSSNGLDKRCS-EIVLKNERGEKRTLVLKH--FKQNlTFLKKGWTSFCQVNRIKAGDSFKFKLVG-TWNKPVLTLCP 545
             6788999999***************998.****************44..4434489************************99.77777888875 PP
5B366.83.1e-21635724595
             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
              +++++l+ +rl+lp  fa+++g++k ++k+++l +e+gr+W+++l+y+k +++++ + GWk+F++ang+ +   ++Fkl++ + + +v++
  890070 635 NVTASSLNCDRLYLPLGFARSNGLDKMSGKKVVLLNEEGRTWKLNLKYNKAGNQTYVRPGWKRFCDANGMSQDQQFTFKLVQ-KHGPPVMR 724
             578899999**********************************************************************998.66666665 PP
6B3696.5e-22747837698
             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             +++++ +++ l+l k+f++++g++k + k+++l++e+gr+W++ +++ k+ + +++++GW +F++ ngLk+gD++ Fkl+g +++++v++++ 
  890070 747 VTASSINKDKLYLRKSFVSSNGLDKGC-KKIVLKNEWGREWNLVFRHYKSHCFTIIKRGWASFCQGNGLKAGDSFKFKLVG-TGEKPVLSLCP 837
             5677888899**************977.7****************999*******************************99.77779999886 PP
7B344.92.1e-14903998198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f++ +++ +++++  l+lp+ f++ +g++k  ++++tl  ++g +  v l  +k sg++ ++kGW+e ++a+g+k  +++v++l++++e+++v+k++ 
  890070 903 FVTLTLTLSAFQTYKLYLPRGFTQVNGINK--PRKITLLGQDGVKRVVDLYQDKISGTMRFGKGWRESCEAQGVKIDESFVLELIWEKEASPVLKFCT 998
             667778999999999********9999995..558********999999977******************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1811111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2011107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44812105IPR003340B3 DNA binding domain
CDDcd100179.44E-1413100No hitNo description
SMARTSM010191.9E-2115105IPR003340B3 DNA binding domain
PfamPF023621.1E-82297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-16147243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-15151249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.521153250IPR003340B3 DNA binding domain
SMARTSM010198.5E-24154250IPR003340B3 DNA binding domain
PfamPF023621.6E-19159249IPR003340B3 DNA binding domain
CDDcd100174.30E-15163239No hitNo description
Gene3DG3DSA:2.40.330.105.8E-21260361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19263364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86267361IPR003340B3 DNA binding domain
CDDcd100172.54E-14267360No hitNo description
SMARTSM010192.0E-27268362IPR003340B3 DNA binding domain
PfamPF023629.3E-20272360IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-19445546IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-18448548IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689451546IPR003340B3 DNA binding domain
CDDcd100172.50E-13451545No hitNo description
SMARTSM010193.0E-27452547IPR003340B3 DNA binding domain
PfamPF023629.4E-18456545IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-20624722IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-19627725IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.452631729IPR003340B3 DNA binding domain
CDDcd100177.90E-16631726No hitNo description
SMARTSM010193.5E-26632729IPR003340B3 DNA binding domain
PfamPF023627.7E-20634725IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19734837IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20742840IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.339742838IPR003340B3 DNA binding domain
SMARTSM010192.8E-26743839IPR003340B3 DNA binding domain
PfamPF023623.9E-21747838IPR003340B3 DNA binding domain
CDDcd100171.50E-18747837No hitNo description
Gene3DG3DSA:2.40.330.101.7E-14896998IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14899997IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-8902988No hitNo description
PROSITE profilePS5086310.2219031000IPR003340B3 DNA binding domain
SMARTSM010192.3E-149031000IPR003340B3 DNA binding domain
PfamPF023629.6E-14903998IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1004 aa     Download sequence    Send to blast
MADQSLLHSP IKPHFFKPLL QGFRTHLNIP VAFFSKHVEG KNDQNKIAKL RSDASEKTWL  60
VKMDGLNLTD GWEDFAFAHD LRIGDIVIFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNSND  120
DDRNDQTNIA SRNSERVKKN PRKKVESSLD HSRFVAKVSA WGLRNDRLYI PLSFARSNGL  180
NKINSKKIYL YNEAGRSWKL DLKHDKSGMH TYIQSGWRSF CAANGIRQGQ YTFKLVRKSA  240
PSLIRLCREK AKPKQRSVAE SSSDQSCFEG SVSPSSLRNN QLFLPRSFVS SNSLEKRCSE  300
IVLKNEQGIK WPSVLKHYKT VTYLTKGWTS FCQVNRIKAG DSYKFKLVGT WTKPVLSLCP  360
TNSNHDKTPL ECPNDVKTLS SNPRSGDDSS KSKEIEEENI EDKNISKTCL EIKKRKYWSR  420
CRASVENMDD DQTNIGNSSR KNVESSSYHS SFEGSVNPSS LYKDQLYLPR NFVSSNGLDK  480
RCSEIVLKNE RGEKRTLVLK HFKQNLTFLK KGWTSFCQVN RIKAGDSFKF KLVGTWNKPV  540
LTLCPTVSNH HKTPLECSEG NKSEENEEED IKDKNTSQDC LEVKKRKYWS KCRASAENMD  600
DDQTNIGSSS RKKRVKKNPI KKADSSSDHS SFVANVTASS LNCDRLYLPL GFARSNGLDK  660
MSGKKVVLLN EEGRTWKLNL KYNKAGNQTY VRPGWKRFCD ANGMSQDQQF TFKLVQKHGP  720
PVMRLYLAEH RPKSESSSHG SYLVGSVTAS SINKDKLYLR KSFVSSNGLD KGCKKIVLKN  780
EWGREWNLVF RHYKSHCFTI IKRGWASFCQ GNGLKAGDSF KFKLVGTGEK PVLSLCPAES  840
SCECPDGSDD VKSLSSNSSS GDDSSRSEEV EEESMEDKNI SQDCLEIKKR KYCCSSSYSQ  900
NRFVTLTLTL SAFQTYKLYL PRGFTQVNGI NKPRKITLLG QDGVKRVVDL YQDKISGTMR  960
FGKGWRESCE AQGVKIDESF VLELIWEKEA SPVLKFCTKL NSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap890070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029470.0BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893387.10.0B3 domain-containing protein REM17 isoform X1
SwissprotQ84WP30.0REM17_ARATH; B3 domain-containing protein REM17
TrEMBLD7KQM90.0D7KQM9_ARALL; T24P13.6
STRINGscaffold_102864.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]