PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 888270
Common NameARALYDRAFT_888270
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 365aa    MW: 40027.5 Da    PI: 5.7896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
888270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10213261355
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  888270 213 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 261
             58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-11208265No hitNo description
SuperFamilySSF474594.32E-17208278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17211278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7213261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGGESNEGEM GFKHGDDESG GIPRVGITSM PLYAKADPFF SSADWDPVVN AAGGFSSSHY  60
HPSMAMDNPG MSCFSHYQPG SGSGFAADMP ASLLPYGDCG GGQIGHFLGS DKKGERLIRA  120
GESSHEDHHQ VSDDAVLGAS PIGKRRLPEA ESQWNKKAVE EFQEDPQRGS DQSQKKHKND  180
QSKETVNKES SQSEEAPKEN YIHMRARRGQ ATNSHSLAER VRREKISERM RLLQELVPGC  240
NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPEINI DIDRILAKDL LQSRDRNTPT  300
LGLNPFSGFQ GTIPNLSTTT NPQYNPLPQT TLESELQNLY QMGFVSNPTT MSSFSPNGRL  360
KPEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap888270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892548.10.0transcription factor bHLH74
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLD7KKM20.0D7KKM2_ARALL; Uncharacterized protein
STRINGscaffold_101064.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]